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Protein Overview: gi|24347681, gi|...

General Information:
Name(s) found: gi|24373409 [NCBI NR]
gi|24347681 [NCBI NR]
Description(s) found:
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  • gi|24373409|ref|NP_717452.1| extracellular nuclease, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347681|gb|AAN54896.1|AE015627_14 extracellular nuclease, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • extracellular nuclease, putative [Shewanella oneidensis MR-1]gi|24347681|gb|AAN54896.1| extracellular nuclease, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • extracellular nuclease, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 948 amino acids

    Gene Ontology:
    Cellular Component: outer membrane-bounded periplasmic space [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: nuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKHKTLLAL AISSVCGFAH GADNLIISEY VEGSGNNKAI ELYNPTSSSI DLSQYQLRFY  60
   61 FNGSTNVGST ISLNGTLAAG ATYVVADNDA SADILAVTNQ QSSASFFNGD DAIVLTHQNQ 120
  121 VIDSLGQVGV DPGSEWGSGD LSTQDNTLRR NPDQLIADPI IDDAVTFNTW LGFAKDDIAD 180
  181 LGKFSVGTPT DPVDPPPSSL ACGEASTAIH VLQGSTNASP LNGQTLVVEA IVVSNQEAGL 240
  241 KGIFVQMADN EADNDPQTSE GVFVYTGTAP TGYVAGDRVR LKAKVTEYQG LTELTTVADH 300
  301 KLCVAGQALP SAAVVTLPVN TSDDFEPFEG MRVRFSQDLV VNEVYKLGRY GEILLGSRRH 360
  361 FIGTQVAAPG ADALAVTAAN QKDSILLDDG LTAQNPDPVI FPAPGLSASN TVRVGDKATA 420
  421 LTGVMHYGFN LYRIMPTESI TFVAENPRPQ SPVLAEGGNL KVASFNVLNY FNGDGQGSGF 480
  481 PTARGANTLS EFERQKTKII SAMVGIGADV FGLMEIENDG FGANSAIADL VAGLNTAVGE 540
  541 NRYAYVIPKI NGNNLSAIGT DAITVGLIYR SDKVSPQGDA RILSSTNSPL DETGQPLFDD 600
  601 GKNRPMLTQA FVLNGSEEAL VVAVNHLKSK GSECAGDPDV NDGQGNCNIT RTRAATAAGQ 660
  661 WIAAQYPEQG VLLIGDLNAY AKEDPLTALA NTGFSELFAK LEKANAYSYV FSGESGQLDH 720
  721 ALANAALVDK VVDVTEWHIN TDEPRVLDYN EEFKTPTQVQ DLYASDAYRS SDHDPVVISL 780
  781 LLEAEKVAPE ASFTKVVNGA SVQFTSTSTD SDGQIVSAQW DFGDNSQGIG EAVSHTYAQS 840
  841 GDYLVTLTVT DNDGLSHSSS QMVTVVVENV KKPPVAQIQR INLWLVDMFI STSYDTDGVI 900
  901 KQHKWKFDNG TRANGPVVLR LARRGEHTVE LTVKDNDKLT DTTTLTYR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..193] FFAS03 1.85 Solution structure of immunoglobulin like domain of mouse nuclear lamin
    2 View Details [194..404] deduced N/A No confident structure predictions are available.
    3 View Details [405..582] FFAS03 1.79 Deoxyribonuclease I
    4 View Details [583..870] PSI-BLAST 8.69897 Surface layer protein
    5 View Details [871..948] PSI-BLAST 7.69897 Structural basis for the promiscuous specificity of the carbohydrate- binding modules from the beta-sandwich super family

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.243556598547425 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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