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Protein Overview: gi|24373192, gi|...

General Information:
Name(s) found: gi|24373192 [NCBI NR]
gi|24347410 [NCBI NR]
Description(s) found:
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  • gi|24373192|ref|NP_717235.1| formyltetrahydrofolate deformylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347410|gb|AAN54679.1|AE015608_8 formyltetrahydrofolate deformylase [Shewanella oneidensis MR-1] [NCBI NR]
  • formyltetrahydrofolate deformylase [Shewanella oneidensis MR-1]gi|24347410|gb|AAN54679.1| formyltetrahydrofolate deformylase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • formyltetrahydrofolate deformylase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 271 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: purine ribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: formyltetrahydrofolate deformylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDCADAQGL IAKITGVCFN HQLNIIKNSE FVDNAQGRFF MRTELEGHFH CEQLLQDLRQ  60
   61 VLPAQNHMTL VSAGKKRIVI LVTKEAHCLG DLLMKAYYGG LNVEIAAVVG NHDVLRELVE 120
  121 KFDIPFHLVS HEGLDRIQHE QALLAAVSQY SPDYLVLAKY MRVLTPDFVA EYPNRILNIH 180
  181 HSFLPAFIGA APYRQAWERG VKIIGATAHF VNNCLDEGPI IKQDVIPVDH SYSALEMAKA 240
  241 GRDVEKSVLS KALQLVLNEQ VVVYGNKTIV F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] PSI-BLAST 4.522879 ACT domain protein from Streptococcus pneumoniae
    2 View Details [76..271] PSI-BLAST 55.0 The apo structure of human glycinamide ribonucleotide transformylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring aldehyde or ketonic groups
    		•  1.82494854621265 bayes_pls_golite062009
  • catalytic activity
    		•  1.01569611874813 bayes_pls_golite062009
  • transferase activity
    		•  0.07375530569672 bayes_pls_golite062009
    2
    Term Confidence Notes
  • hydroxymethyl-, formyl- and related transferase activity
    		•  4.30911230869939 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  3.93829204810029 bayes_pls_golite062009
  • phosphoribosylglycinamide formyltransferase activity
    		•  3.16061609458624 bayes_pls_golite062009
  • catalytic activity
    		•  2.53047786804923 bayes_pls_golite062009
  • methyltransferase activity
    		•  1.49959796419617 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  1.49630496597474 bayes_pls_golite062009
  • transferase activity
    		•  1.21569993951472 bayes_pls_golite062009
  • formyltetrahydrofolate deformylase activity
    		•  0.85803295611657 bayes_pls_golite062009
  • methionyl-tRNA formyltransferase activity
    		•  0.27296524587077 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle