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Protein Overview: gi|24347252, gi|...

General Information:
Name(s) found: gi|24373073 [NCBI NR]
gi|24347252 [NCBI NR]
Description(s) found:
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  • gi|24373073|ref|NP_717116.1| glycogen synthase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347252|gb|AAN54560.1|AE015595_7 glycogen synthase [Shewanella oneidensis MR-1] [NCBI NR]
  • glycogen synthase [Shewanella oneidensis MR-1]gi|24347252|gb|AAN54560.1| glycogen synthase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • glycogen synthase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 534 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glycogen biosynthetic process [ISSLink to PubMed article]
    Molecular Function: glycogen (starch) synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRILMVAAE NGALKGAKVG GMADVIRDLP QALAGVGIQA DVIMPSYGFL TAQGAKQIGE  60
   61 FDVSFAGRHE LIKLYWLAHP LVPGANIYLL EHGLWQSIPG QIYSQGTKDR PFADDATKFA 120
  121 FLCVSVAKAL VTGLVPMPQL LHLHDWHTGC LAMLRALAPE YQALQAIECV FSIHNLALQG 180
  181 IRPLGHDASS FAAWFPSLFA HLDVTQLADI IDPRYPHCIN PMRMGIRLAD RVHLVSPTYA 240
  241 KEVLLPSQPE RGFFGGEGLE ADLQHKADQG RVLGILNGCD YPQALTKKSF KRMGLAEFTA 300
  301 LLSDIESALV QWQATQSQVR GVDMIAFTRL QALWRQASLE AFPAFLLTSV GRLTDQKVLI 360
  361 LRHILPSGLS VLETLLLQLQ QTQPNALFVL LGSGDPEIGQ FFQTLAAKYA HFVFLQGYHE 420
  421 ALSQCLYQYG DLLLMPSSFE PCGISQMLAM RSGQPCLVHG VGGLQDTVED GVDGFVFYGE 480
  481 DIKSQGEALL AKLAEALEKF DSSDWTQLKR KAKARRFDWR SIALDYKKQL YNIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..534] PSI-BLAST 59.69897 Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glycogen phosphorylase activity
    		•  3.34851380039572 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  3.04530122157712 bayes_pls_golite062009
  • catalytic activity
    		•  3.02192459767177 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.94500176353224 bayes_pls_golite062009
  • phosphorylase activity
    		•  2.90311878311075 bayes_pls_golite062009
  • glycogen (starch) synthase activity
    		•  2.05207088363955 bayes_pls_golite062009
  • glucosyltransferase activity
    		•  1.8062586862583 bayes_pls_golite062009
  • transferase activity
    		•  1.67770954408305 bayes_pls_golite062009
  • UDP-N-acetylglucosamine 2-epimerase activity
    		•  1.63103907245982 bayes_pls_golite062009
  • lipopolysaccharide heptosyltransferase activity
    		•  1.555502709955 bayes_pls_golite062009
  • UDP-glucosyltransferase activity
    		•  1.4199532885636 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  1.30934991061674 bayes_pls_golite062009
  • starch synthase activity
    		•  1.073959209177 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.27693350081385 bayes_pls_golite062009
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
    		•  0.22009679964126 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.73

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle