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Protein Overview: gi|24347234, gi|...

General Information:
Name(s) found: gi|24373058 [NCBI NR]
gi|24347234 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373058|ref|NP_717101.1| isocitrate lyase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347234|gb|AAN54545.1|AE015593_4 isocitrate lyase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tricarboxylic acid cycle [ISSLink to PubMed article]
    Molecular Function: isocitrate lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKATQTSRQ AQIDAIKKDW AENPRWKNVR RPYTAEEVVA LRGSIVPENT IAKRGAAKLW  60
   61 DLVNGGSKKG YVNSLGALTG GQAVQQAKAG IEAIYLSGWQ VAADANLAGT MYPDQSLYPA 120
  121 NSVPAVVSRI NNSFRRADQI QWSNGVNPED ENFVDYFLPI IADAEAGFGG VLNAFELMKS 180
  181 MIDAGAAGVH FEDQLASVKK CGHMGGKVLV PTQEAVQKLV AARLAADVSG VETLVIARTD 240
  241 ANAADLLTSD CDPYDRDFVT GERTNEGFYR VNAGLDQAIS RGLAYAPYAD LIWCETAKPD 300
  301 LEEARRFAEA IHAQYPDQLL AYNCSPSFNW KKNLDDATIA RFQQALSDMG YKYQFITLAG 360
  361 IHNMWYNMFD LAYDYARGEG MKHYVEKVQE VEFAAAKKGY TFVAHQQEVG TGYFDQVTTV 420
  421 IQGGHSSVTA LTGSTEEEQF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..440] PSI-BLAST 166.0 Isocitrate lyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.59838799615646 bayes_pls_golite062009
  • methylisocitrate lyase activity
    		•  2.06824730122158 bayes_pls_golite062009
  • 3-methyl-2-oxobutanoate hydroxymethyltransferase activity
    		•  0.987472653142222 bayes_pls_golite062009
  • isocitrate lyase activity
    		•  0.714624467380094 bayes_pls_golite062009
  • transferase activity
    		•  0.368032846714701 bayes_pls_golite062009
  • lyase activity
    		•  0.0456521871650777 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle