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Protein Overview: gi|24347151, gi|...

General Information:
Name(s) found: gi|24372998 [NCBI NR]
gi|24347151 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372998|ref|NP_717040.1| outer membrane porin, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347151|gb|AAN54485.1|AE015585_6 outer membrane porin, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 345 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transport [ISSLink to PubMed article]
    Molecular Function: porin activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSFAISLL TLALCATQAV ADEHKFYGRI DYSVTHSDSG SATHKNKSGT ILENNFSRFG  60
   61 IKGSSQLTDS TSLFYQIEVG VNGESQDSGD KPFSARPTFI GVKHSTYGAL AVGRIDPVFK 120
  121 MAKGMSDAMD NYSLKHDRLF AGDKRWGDSF EYKSAHWNKL QLGVSYLLED NHYSNNDNRR 180
  181 DNGNYQLAVT YGDKFFKTSD VYAAVAYSDG VEDIEAYRGV IQYKWDKWQF ATMLQHSQLV 240
  241 NTDKTDWQQR EGDGVIVSAK YQLGQLSLNA QYGFDNSGTG LIANRIYASK NTLIDEVPEI 300
  301 SQWAIGAEYK LSKSTRLHTE IGQFDVKQYD DFDDTIVSLG MRYDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..345] PSI-BLAST 48.221849 CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. COLI PORINS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  2.60507547654721 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.86109425700917 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.424956094980482 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle