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Protein Overview: gi|24372903, gi|...

General Information:
Name(s) found: gi|24372903 [NCBI NR]
gi|24347028 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372903|ref|NP_716945.1| glutamate synthase subunit alpha [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347028|gb|AAN54390.1|AE015576_8 glutamate synthase, large subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1482 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glutamate biosynthetic process [ISSLink to PubMed article]
    Molecular Function: glutamate synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLYHPSFER DNCGFGLIAQ MDGEASHRIV RTAIHGLDRM KHRGGIASDG RTGDGCGLLM  60
   61 QLPLQFFEAV AAENDWHLSR KFAVGMLFLS QDEELADQAK FILERELERE TLSIAGWRKV 120
  121 PVNPDVLGEI GKSSLPQIYQ VLINAPIGWR EKDLERRLYM ARRRLEQQIT DDKDFYVASL 180
  181 SGQVIVYKGL MMPADLPAFY PDLADIRLKS SICLFHQRFS TNTSPKWPLA QPFRYLAHNG 240
  241 EINTITGNRQ WARARAYKFN SPLLPDLQQA APFVNETGSD SSSLDNMLEM LLSGGMDLYR 300
  301 AMRLLIPPAW QSNPEMDDEL KAFYDFNSMH MEPWDGPAGI VMTNGRHAAC AVDRNGLRPS 360
  361 RYVITKDRIL TLASEVGIWD YAADEVIEKG RVGPGELLVL DTLNGRLYQS FEIDNDLKRR 420
  421 HPYKEWMAKN SRTLIPAEQL TTEQHGASEL SPEQLLQYQK QFGYTREELE QVIWVLAKQG 480
  481 EEATGSMGDD TPMAVLSKKS RSLYDYFRQK FAQVTNPPID PLREKHVMSL ATCIGREQNL 540
  541 FNETTGHAYR VMFNSPILLF SDFNQLLGLD STYYRANIVD LNYEPKEGLE QAIRRITSEA 600
  601 ERLARSGTTL LILSDRAIDK SAQVIPVAMA VGAVQQMLVS KSLRCDTNII VETASARDPH 660
  661 HFAVLLGFGA TAIYPYLVYE SISDLAKRHD LTDTTALMLN FRYGIEKGLR KIMSKMGIST 720
  721 IGSYRCSQQF EAIGIASDVI ELCFKGVISR IEGASFEDIA NDQALLHKAA YRAHVPLPQG 780
  781 GLLKYVDGGE YHCFNPDVVN TLQASLIDKN FATYKKFAEL VDNRPIATLR DLIGIKAGQT 840
  841 AIELNNVEAA SNLYPRFDSA AMSIGALSPE AHEALAIAMN RLGGRSNSGE GGEDARRFNT 900
  901 ERNSAIKQIA SARFGVTAHY LVNADVLQIK VAQGAKPGEG GQLPGHKVSV EIAGLRHARP 960
  961 GVTLISPPPH HDIYSIEDLA QLIFDLKQIN TKALISVKLV SEPGVGTIAT GVAKAYADMI1020
 1021 TISGYDGGTG ASPITSVKYA GSPWELGLAE VHQSLVENGL RHKIRLQVDG GLKTGTDVIK1080
 1081 AALLGAESFG FGTVPMIALG CKYLRICHLN NCATGVATQD KKLRDNHYHG LPERVMTYFE1140
 1141 FVAEEVREWM ATLGVSKFED LVGRSEWLHT LEGQTDKQRG LDLAPILYQP NVRASTSRTW1200
 1201 QETNPPADLG LLNQHLLNEC QSAVDKGESF DAAYSINNTD RSVGARLSGY IATTLGVKGS1260
 1261 KAPIKLSFNG SAGQSFGVWN SPGLELKLCG DANDYVGKGM SGGKIVIYPP LGSPFQSERS1320
 1321 AIVGNTCLYG ATGGRFFAAG QAGERFAVRN SGAIAVVEGL GDNGCEYMTS GIVVVLGKTG1380
 1381 VNFGAGMTGG FAYVFDQFGR FNRRVNSELV DTQKLESPIQ QQHLKGLIEE HVAETGSEHA1440
 1441 KMILSDFANW LDCFVLVKPK NIAVADLLKL EQSSPELAVK AG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1482] PSI-BLAST 1000.0 Alpha subunit of glutamate synthase, C-terminal domain; Alpha subunit of glutamate synthase, central and FMN domains; Alpha subunit of glutamate synthase, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glutamate synthase activity
    		•  10.2123323896554 bayes_pls_golite062009
  • glutamate synthase activity, NADH or NADPH as acceptor
    		•  9.64220719720108 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
    		•  8.40816887743017 bayes_pls_golite062009
  • glutamate synthase (NADPH) activity
    		•  7.71666213946687 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.15666801512485 bayes_pls_golite062009
  • catalytic activity
    		•  1.19663085909195 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.330721070169443 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle