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Protein Overview: gi|24372902, gi|...

General Information:
Name(s) found: gi|24372902 [NCBI NR]
gi|24347027 [NCBI NR]
Description(s) found:
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  • gi|24372902|ref|NP_716944.1| glutamate synthase subunit beta [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347027|gb|AAN54389.1|AE015576_7 glutamate synthase, small subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • glutamate synthase, small subunit [Shewanella oneidensis MR-1]gi|24347027|gb|AAN54389.1| glutamate synthase, small subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • glutamate synthase, small subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 468 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glutamate biosynthetic process [ISSLink to PubMed article]
    Molecular Function: glutamate synthase (NADPH) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDFQFIEV GRKDPTKHPA AKRSTQFIEI YQPFAQAQVS EQADRCLDCG NPYCEWKCPL  60
   61 HNYIPNWLKL AQQGRIMEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN ADFGAVTIGN 120
  121 VEKYITDTAI AQGWRPDMSK VTPRKEKVAI VGAGPAGLGC ADILARNGVK AVVFDKYPQI 180
  181 GGLLTYGIPA FKLDKAVMAT RRTVLEGMGI EFKLGVTVGK DVAFNQLLEE YDAVFLGMGT 240
  241 YTAMKAGLEG EDAQGVYQAL PYLIGNTHHL MGSTSPDMPY LNLAGKRVVV LGGGDTAMDC 300
  301 VRTAVRQGAS SVICAYRRDE ANMPGSRREV QNAREEGVNF LFNRQPVAIK TQDGKVLGVE 360
  361 CVETQMGKAD ASGRQRAEAI VGSEQLLEAD AVIIAFGFQP SPAPWFADYG IELDQWGRVK 420
  421 ASKQADNPFQ TTNPKVFAGG DMVRGSDLVV TAIAEGRDAA QGILNYLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..468] PSI-BLAST 65.522879 Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glutamate synthase activity
    		•  8.25305391467034 bayes_pls_golite062009
  • glutamate synthase activity, NADH or NADPH as acceptor
    		•  8.23578981764913 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
    		•  7.02480361242491 bayes_pls_golite062009
  • glutamate synthase (NADPH) activity
    		•  6.79992270958953 bayes_pls_golite062009
  • succinate dehydrogenase activity
    		•  1.80846474206463 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.79641444157516 bayes_pls_golite062009
  • catalytic activity
    		•  1.56773888754354 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  0.384435272305167 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle