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Protein Overview: gi|24372879, gi|...

General Information:
Name(s) found: gi|24372879 [NCBI NR]
gi|24346996 [NCBI NR]
Description(s) found:
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  • gi|24372879|ref|NP_716921.1| aspartate carbamoyltransferase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346996|gb|AAN54366.1|AE015574_2 aspartate carbamoyltransferase [Shewanella oneidensis MR-1] [NCBI NR]
  • aspartate carbamoyltransferase [Shewanella oneidensis MR-1]gi|24346996|gb|AAN54366.1| aspartate carbamoyltransferase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • aspartate carbamoyltransferase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 339 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pyrimidine ribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: aspartate carbamoyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQFEGSHIL SVNQLDLDSI QTIFNVAHRM MPYALREKRT KVLEGAILGN LFFEPSTRTR  60
   61 VSFGCAFNLL GGHVRETTGM ASSSLSKGES LYDTARVLST YSDVIAMRHP DSYSVKEFAE 120
  121 GSRVPVINGG DGSNEHPTQA LLDLFTIQKE LGHASRGIDG MHIAMVGDLK FGRTVHSLSR 180
  181 LLCMYKNISF TLISPTELAM PDYVISDIEN AGHSIKITDQ LEGHLDKADI LYLTRIQEER 240
  241 FPSQEEANKY RGKFRLNRSI YTQHCKSNTV IMHPLPRDSR AQANELDNDL NSHPNLAIFR 300
  301 QADNGLLIRM ALFALTLGVD SQLEKYECPV NWYSRKADR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..339] PSI-BLAST 103.0 Aspartate carbamoyltransferase catalytic subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ornithine carbamoyltransferase activity
    		•  6.08861672645671 bayes_pls_golite062009
  • carboxyl- or carbamoyltransferase activity
    		•  5.32518877756022 bayes_pls_golite062009
  • aspartate carbamoyltransferase activity
    		•  3.84118892938517 bayes_pls_golite062009
  • carbamoyl-phosphate synthase activity
    		•  2.21516900257798 bayes_pls_golite062009
  • carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
    		•  2.19154218663721 bayes_pls_golite062009
  • catalytic activity
    		•  2.06069688716378 bayes_pls_golite062009
  • transferase activity
    		•  1.58523544051826 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  1.54712264845123 bayes_pls_golite062009
  • binding
    		•  1.00470116390248 bayes_pls_golite062009
  • dihydroorotase activity
    		•  0.585784960037124 bayes_pls_golite062009
  • protein binding
    		•  0.171217252293449 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle