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Protein Overview: gi|24371995, gi|...

General Information:
Name(s) found: gi|24371995 [NCBI NR]
gi|24345853 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24371995|ref|NP_716037.1| fumarate reductase iron-sulfur subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345853|gb|AAN53482.1|AE015488_4 fumarate reductase iron-sulfur protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    tricarboxylic acid cycle [ISSLink to PubMed article]
    Molecular Function: succinate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGRQLTFN IFRYDPQEPN DKPKMVRYQL TETPGMTVFI ALNKLREEQD TSLQFDFVCR  60
   61 AGICGSCAMV INGFPTLACR TLTAKYPKGE ITLMPLPGFE LIGDLSVNTG KFMRELAERL 120
  121 KLWLHPKAND ISIHRLEEPM APEEAARLYE LERCVECGVC VSACATKQMR ETFVGAVGMM 180
  181 KIARFELDSR DARTAEDFYH VIGNQDGVFG CMTLLGCQDN CPKDLPHMQQ IAYLRRKMAM 240
  241 TLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..243] PSI-BLAST 42.39794 Fumarate reductase; Fumarate reductase iron-sulfur protein, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • succinate dehydrogenase (ubiquinone) activity
    		•  8.67170708058767 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor
    		•  8.67170708058767 bayes_pls_golite062009
  • electron carrier activity
    		•  5.46307392364196 bayes_pls_golite062009
  • succinate dehydrogenase activity
    		•  5.17247395944711 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  4.95798078106244 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  4.38887210619429 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.24568355093737 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  4.24327638063454 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  4.15859537745252 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  3.78210410787032 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  3.67682177056786 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  3.28424324316751 bayes_pls_golite062009
  • metal cluster binding
    		•  3.28424324316751 bayes_pls_golite062009
  • binding
    		•  1.29066915338738 bayes_pls_golite062009
  • protein binding
    		•  0.507343948317508 bayes_pls_golite062009
  • catalytic activity
    		•  0.105119876745552 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle