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Protein Overview: HEM6_SHEON

General Information:
Name(s) found: HEM6_SHEON [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Oxygen-dependent coproporphyrinogen-III oxidase OS=Shewanella oneidensis (strain MR-1) GN=hemF PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 302 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: porphyrin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: coproporphyrinogen oxidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPDATVVK AFLLDLQHRI CAGLEQLDGQ ASFAADSWTR AEGGGGTSRV LTQGAVFEQA  60
   61 GVNFSHVTGA AMPASATAHR PELAGRSFEA MGVSLVIHPK NPYIPTTHAN VRFFIAHKDG 120
  121 AEPVWWFGGG FDLTPYYPFE EDVREWHQSA KNLCQPFGDD VYPKYKKWCD EYFFLPHRNE 180
  181 TRGVGGLFFD DLNQAGFDKS FDFMQAVGNG FLTAYAPIVE RRKDTDYGER ERDFQLYRRG 240
  241 RYVEFNLVYD RGTLFGLQTG GRTESILMSM PPLVRWQYAY TPAAGSPEAD LYDNYLKPRD 300
  301 WV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..302] PSI-BLAST 139.0 Hypothetical protein from Leishmania major Lmaj006828

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  5.81247465629978 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  5.1724965213902 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  3.24343461428814 bayes_pls_golite062009
  • binding
    		•  1.8297496024321 bayes_pls_golite062009
  • catalytic activity
    		•  1.56559069221062 bayes_pls_golite062009
  • protein binding
    		•  0.374996803717649 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.0360049460478797 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle