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Protein Overview: RSMB_SHEON

General Information:
Name(s) found: RSMB_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Ribosomal RNA small subunit methyltransferase B OS=Shewanella oneidensis (strain MR-1) GN=rsmB PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 428 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA methylation [ISSLink to PubMed article]
    Molecular Function: rRNA (cytosine) methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLRALAAKA IFDVLEKGVS LSVALPEQQK HLASGKDKAL LAELCYGVMR TLPQIEKRTA  60
   61 ECLAKPLKGK QRIIHQLLIV GCYQLYFTRI PSHAAISETA EACRQLKFEG MVKVVNGVLR 120
  121 NIQRQLTPLS NESETLSYNT PGWLIKRLKT AYPGNWQEII QQSHERPPMW LRNNRLSQSR 180
  181 DEYLAALDKL EIDASAGLSD DAILLAAPKD VATLPLFLEG AASVQDGAAQ WAATLLAPQA 240
  241 NELILDACAA PGGKSCHLLE LEPSIKLIAV DFDAKRLERV QQNLDRLSLK AEVIHGDAAN 300
  301 IDSWWQGEQF DRILLDAPCS ATGVIRRHPD IKWLRKNHDI EELAELQRQI LDHCWKWLKP 360
  361 GGTLLYATCS ILPQENRDQI SAFLARTADA KLDTLVQQAS SQDIGWQITP GQHNMDGFYY 420
  421 ARLLKATH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..428] PSI-BLAST 81.69897 The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  4.64500705012502 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  4.60300178039953 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.57389022626587 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.74830027382001 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  3.6174490060285 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  3.00112136063228 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  2.74535979387581 bayes_pls_golite062009
  • transferase activity
    		•  2.42370637689376 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  2.03602074114015 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  1.93015827477588 bayes_pls_golite062009
  • DNA-methyltransferase activity
    		•  1.8182614465692 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.81209017364408 bayes_pls_golite062009
  • catalytic activity
    		•  1.62377578202456 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.42140847541194 bayes_pls_golite062009
  • arginine N-methyltransferase activity
    		•  1.40233857644962 bayes_pls_golite062009
  • protein-arginine N-methyltransferase activity
    		•  1.40233857644962 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  1.32437128142157 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  1.26573118969035 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  0.88654745691593 bayes_pls_golite062009
  • histone-arginine N-methyltransferase activity
    		•  0.67380437956274 bayes_pls_golite062009
  • O-methyltransferase activity
    		•  0.59365370184158 bayes_pls_golite062009
  • rRNA (guanine-N2-)-methyltransferase activity
    		•  0.427131446117391 bayes_pls_golite062009
  • protein-arginine omega-N monomethyltransferase activity
    		•  0.355464145533041 bayes_pls_golite062009
  • rRNA (cytosine) methyltransferase activity
    		•  0.346042596102079 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle