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Protein Overview: NOP8_YEAST

General Information:
Name(s) found: NOP8_YEAST [Swiss-Prot]
Description(s) found:
  • 60S ribosome subunit biogenesis protein NOP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP8 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 484 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVIQKRIF VGNIFHNADD CYSELLDRFG KFGDCQDFQF EKHNHFAFID IRFNDEADFN  60
   61 KLRKSFNNVK FKGNILKVDE AKPNWESTWA VQHAKDLKED IILNAKMKKK NWQHYKKMEN 120
  121 VAKSWKDHKE VIAGRMREAP RKRSQLRNIT FRINVNGSLK VYKCYKTKLW GYERNKELND 180
  181 LVYKFTNNFW KNGYNHIVDR LDYSRAVKTV RFKNGLKQLT VSKDENVCSG EMDSDENMSE 240
  241 EEKEKNNVIL NDLLKDFDFD KPMTLNDSDE ELLTEQRKGE EEEEEEEEKE VNAPEYENVN 300
  301 KTKDQSTLPQ EKPEERKEQD EGDGQEDNEF IPTFTKEIGQ GTISNTETLR NLFNPNEAEP 360
  361 VSQFKLIEDS DNDIDHAKDV DVNQLEEEVS KSSDTLGLTS APVPHVSRDK DNKNFLFFPH 420
  421 LQSPFLVGQT QLSKVRAPGR ETMLSNWDEE FWANRGNWTR DMRRKMKDAL KHRKRKQSKS 480
  481 GLLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..155] PSI-BLAST 8.0 Sex-lethal protein
    2 View Details [156..484] deduced N/A No confident structure predictions are available.
    3 View Details [328..389] deduced N/A No confident structure predictions are available.
    4 View Details [390..484] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.72964573417386 bayes_pls_golite062009
  • binding
    		•  3.0101982407193 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34356093608328 bayes_pls_golite062009
    		• 1.46562488829931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.10982714865204 bayes_pls_golite062009
  • protein binding
    		•  0.89093640300829 bayes_pls_golite062009
  • mRNA binding
    		•  0.554135435832456 bayes_pls_golite062009
  • ribosomal large subunit binding
    		•  0.13509933485234 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle