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Protein Overview: gi|42519241, gi|...

General Information:
Name(s) found: gi|42519241 [NCBI NR]
gi|41583529 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|42519241|ref|NP_965171.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii NCC 533] [NCBI NR]
  • gi|41583529|gb|AAS09137.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii NCC 533] [NCBI NR]
    • Organism: Lactobacillus johnsonii NCC 533
    Length: 372 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESKTTKET TMTLDKKVKE VVKEVKKDKQ ITEKEFTAQL IKPYDLQGKA VDQLVQEFED  60
   61 NGISIVDENG EPSKLALKKQ KDVEKAELKD MSAPSSVRMN DPVRMYLKEI GRVSLLNADQ 120
  121 EIALAKRIES GDEEAKQELA EANLRLVVSI AKRYVGRGMS FLDLIQEGNM GLMKAVDKFD 180
  181 YRLGFKFSTY ATWWIRQAIT RAIADQARTI RIPVHMVETI NKLIRIQRQL LQDLGREPTP 240
  241 EEIGAEMDMP TDKVREILKI AQEPVSLETP IGEEDDSHLG DFIEDKDATS PEQHASYELL 300
  301 KEQLEEVLDT LTDREENVLR LRFGLDDGRT RTLEEVGKVF GVTRERIRQI EAKALRKLRH 360
  361 PSRSNQLKDF LD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..372] PSI-BLAST 60.522879 Sigma70


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle