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Protein Overview: gi|41179262, gi|...

General Information:
Name(s) found: gi|41179262 [NCBI NR]
gi|39652615 [NCBI NR]
Description(s) found:
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  • gi|41179262|ref|NP_958595.1| hypothetical protein Ljo_0324 [Lactobacillus prophage Lj965] [NCBI NR]
  • gi|39652615|gb|AAK27911.2| putative protein [Lactobacillus johnsonii prophage Lj965] [NCBI NR]
  • Lj965 prophage protein [Lactobacillus johnsonii NCC 533]gi|41582699|gb|AAS08310.1| Lj965 prophage protein [Lactobacillus johnsonii prophage Lj965]gi|41179262|ref|NP_958595.1| putative protein [Lactobacillus johnsonii prophage Lj965]gi|39652615|gb|AAK27 [nrdb_11152004_Chlamydomonas]
  • putative protein [Lactobacillus johnsonii prophage Lj965] [nr-271106-contam.fasta]
    • Organism: Lactobacillus prophage Lj965
    Length: 1624 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTQTKEVRD AWRASQRTLD IKVAVNGKTY TATDINSLKY DSGAYTGDTF AIGSTYSNSV  60
   61 QIEFSHLIEN LKLGMEVLPS IGIKTSSGYV YEPLGVFIIS SEIKMDRNNN LTSISASDRF 120
  121 CGLEGSYKSK LAYPAKVLDV IAEICEQSGV KANVDDLARL PHQADLPRPI TGQTYRKALG 180
  181 WIAQLYAGYA TFDRKGLFTI RTIAEPNYEL DPSQYEQAGL TKNEAPYRIS GIQCQTTITT 240
  241 KTRDGEDTDE TKNYQVGDTN GSQIKLENNI MTPDRLTNIW EQIKDVNFYP FSLNWFGNPA 300
  301 IEAGDWLKLQ DKQGNKFIVP NNSYTLDFNG GLSATSKADQ TSSTDSVIAW EGTFSQTIRE 360
  361 LQGRKAPDGT VIFPPSVTEP PTNAKPNDVW FKQNGNSTEL WVFTEQEDGT RKWIRRDLTP 420
  421 DEIKKQVQEA QDGLKDAKKE IADNLAKADK DIAELNESIN NQKGSLDGLS TTVNTVVIPK 480
  481 VTDVTNQVSD AIKKVNEQKN IVTGLQNQAI QQGKDISKIT SDVHGVTVDL ANLNGDVNQT 540
  541 KATVQGLQST LGNAQGDIAQ IKVDAKKLET SLSGKVDNST YATFVNQTNQ ALNAKLIASD 600
  601 LNGYAKTTDL QATANGLQFN INSVTDKLNN LRIGGRNLVG GTDKEYVMGF GIPNTVWKDN 660
  661 FAYISLPLIS GDGGEILPQG AGFWHVLSPG EEYTQTIWIE TDAIIKSLNG TFLTWLTMDD 720
  721 GHDVQKAYIQ RIGNNSYKIV GSYTWPQNKK GNRVRLFDIF SLPNSIDLKS GTYLKFGKLK 780
  781 LEVGNASTDW TPAVEDTEHD LESLSARITI NSQQFGSYYT KGESDNRTNT AKNEVINSIK 840
  841 NDSNWHGLTN ILTNSGFIQT ADGFIQKVQQ TMQPIINENN SGGVNLLTNT YTLRNFNNAG 900
  901 NAGEATGFEI DSGDSHKNEL NAGEISTNVF HVYAKDLNHA PVYFGQNFTL PKGTWTLSFL 960
  961 VRHNGSSEQK IRLSFYTDDC ANRGWIPLGT SDEIDNIWKR HQITFTTTQE IFEQNPRVHM1020
 1021 PTDDIVPGGS LYFANFKLES GSIATTWCPA PEDLAKQVAV TELGQTIKGL QSTVSSNYGN1080
 1081 LQSQISQTAG TIRNEITDRT NNLQSQITQN ANNISIKVNA VGDLSNICLN PTFIDGSTEG1140
 1141 WENVFSSSGD PGSPTKFYGG VNTRNAFYGN MFSVAAGDKY FFSVFAWQNQ STNPLNIGFT1200
 1201 YLQKDGTWNW QSAINFAPNE GARTKSGSIT IPKEAVKARI WVEIDSFSNF GNWWFTNLIV1260
 1261 RKNDTISQIN MSAGTTLIQN DKIYMDASST VFSGKAFIPD AAITNISADK INTGTLDAGR1320
 1321 INVINLNANN ITTGTIKGQN SSFNLTDGTL TALNQYNEGV FMRNGKLEFT SRQSWNNNST1380
 1381 ATYGYIQSLP KMFALGYNYG GLDINGTSGF VLHNDKTKIK TSNSGQSGSA VEGGSYIFGS1440
 1441 DGLTSINNEN SVIINAGAQS YSEWTAGISL LSGNASRNVP PSITLGSSNS LNDRSTVTIS1500
 1501 GSLAVLGSKN AAVRTSQGLR AINAYETAEY YFGDIGRAKT NSNGAVCIYM DPLFLETVNT1560
 1561 GVPYHIFLTS YSEARIWVSE MYPSYFVIRS DKPNADFVWE IKAKRKGYEN DRLKIIDQEK1620
 1621 KVNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..645] FFAS03 1.26 No description for 2oevA was found.
    2 View Details [646..858] deduced N/A No confident structure predictions are available.
    3 View Details [859..1249] PSI-BLAST 10.30103 Heavy meromyosin subfragment
    4 View Details [1250..1333] deduced N/A Confident ab initio structure predictions are available.
    5 View Details [1334..1624] PSI-BLAST 6.0 STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH ITS MAIN PRODUCT BETA-CYCLODEXTRIN


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle