YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|58531994, gi|...

General Information:
Name(s) found: gi|58531994 [NCBI NR]
gi|38346175 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|58531994|emb|CAE04094.3| OSJNBa0096F01.3 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • emb|CAE04093.2| OSJNBa0096F01.2 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • OSJNBa0096F01.2 [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • OSJNBa0096F01.3 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1132 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGDWPESPS QEVLYADEIA AVRAVLGAGL PEARVVAAIS RCGGNAERAI NALLDDATAG  60
   61 VEDKPEPKKG KGAKTAAPPV KAERDAGGAA PKPPPPPVKV EVLDDEPLGS QESNGCSARV 120
  121 KKEREDELLV KAPPPMPDRV KEEDGVAAKR GAATANAAGI SLVPRPKKRS RVHDEADTID 180
  181 LTATHPVPYL NPRPIRAVPP PEAMEMLESR RVRARPPPPS SDLRMVVAPP DAEFGEFPEE 240
  241 RDWFLVGRSY VTGLSTNRGR RRLDAGELVH FSFPSLERTY GGIKVSNKKA AALAEIVRFS 300
  301 TNRAGEIGKL STEWTKCLVP LVSSSKVKIQ GKIVFPTVEL RLMQEILLYV SFYIHRSVFT 360
  361 ASGNNSSWDL LAPANVDYST NPLYRLFRLL KLRAFTKADI TPEELAAGKR PRNLRGDDND 420
  421 EDEPMAIVGL ENRRTAGQTF PEQGTDEQAI SEAALNKIVG TAETYDLEEA EPPSTLVSVL 480
  481 KPYQKEALFW MSQLEKGIDG DQAKKTLHPC WSAYKIVDKR APAVYVNVFT GEATTQFQSV 540
  541 TQSARGGILA DAMGLGKTVM TIALILSNPR GELEQDKRGT RDRDTKAQTS RSSVRGGTLI 600
  601 ICPMALLGQW KDELEAHSTP GALSVFVYYG GDRTTDLRFM AQHSVVLTTY GVLQSAHKND 660
  661 GSSIFHRIDW YRVVLDEAHT IKSPRTKAAR AAYELTSHCR WCLTGTPLQN NLEDLFSLLC 720
  721 FLHVEPWGDA SWWNKLIQRP YENGDERGLK LVRAILRPLM LRRTKETKDK MGNPILVLPP 780
  781 ANIEIVECEQ SEDERDFYEA LFRRSKVQFD KFVAQGSVLN NYANILELLL RLRQCCDHPF 840
  841 LVISRADTQK YTDLDELAQR FLDGVQRDSA RRSAPPSQAY VEEVVEEIRQ GATTECPICL 900
  901 ESASDDPVLT PCAHRMCREC LLSSWRTPSG GPCPLCRSPI TKSELITLPS QCRFQVDPEN 960
  961 NWKDSCKVIK LIKILEGLQE KREKSIVFSQ FTSFFDLLEV PFNQKGIKFL RFDGKLSQKH1020
 1021 REKVLKEFSE SKDKLVLLMS LKAGGVGLNL TAASNVFLMD PWWNPAVEEQ AIMRIHRIGQ1080
 1081 KRAVQVRRFI VKDTVEERMQ KVQACKQRMI SGALTDDEVR SARIEQLKML FT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] MSA 12.425996 View MSA. No confident structure predictions are available.
    2 View Details [184..236] deduced N/A No confident structure predictions are available.
    3 View Details [237..361] Pfam 18.124939 No description for PF08797.3 was found. No confident structure predictions are available.
    4 View Details [362..507] deduced N/A No confident structure predictions are available.
    5 View Details [508..1040] PSI-BLAST 86.0 Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
    6 View Details [1041..1132] PSI-BLAST 35.69897 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle