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Protein Overview: gi|6320735|ref|N...

General Information:
Name(s) found: gi|6320735|ref|NP_010816.1| [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
Description(s) found:
  • Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1 [Saccharomyces cerevisiae] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLGDIVEK DTSDSVESND NGTLSTNNCG TGFPELYKPK KISSWKERLR EKRAQKKKTS  60
   61 GKDAEKQQTS TDAPLSEAKS IHNENIKVLQ GMSDEQIVQE REDLYNSLDP KLIAKLLKNI 120
  121 NKRAKDENNT PLFAEIEGAS GTWVGGNKQG IYDLPPLDDE DVDVALEIRP MLGKDAKHVQ 180
  181 FEEAGKEKDV EGEGKTNDDV DDIAPLDFQM AQCIDHMKNE ELFKDVHFIK EESQNEINLE 240
  241 KLDINDPNFN DKLHEKYFPD LPKEVDKLKW MQPVQQKTDK NYIIEDVSEC RFDFNGDLVP 300
  301 PTRQIDSTIH SGLHHHSDSP ELAGYTIVEL EHLARSTFPS QRCIAIQTLG RILYKLGQKS 360
  361 YYQLVPEIDA DTYKEDGSIS NVMDKIYSMF WDLIKDGKVI ESLEISSDEK FTRNLSVRNY 420
  421 AIDALWLWKQ GGGDFRTKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] Pcons 2.14 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    2 View Details [139..289] Pcons 2.14 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    3 View Details [290..439] Pcons 2.14 Constant regulatory domain of protein phosphatase 2a, pr65alpha


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle