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Protein Overview: gi|87127142|gb|A...

General Information:
Name(s) found: gi|87127142|gb|ABD21656.1| [nr-271106-contam.fasta]
gi|87161168|ref|YP_494807.1| [nr-271106-contam.fasta]
Description(s) found:
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  • 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus USA300] [nr-271106-contam.fasta]
  • 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus USA300_FPR3757] [NCBI_RefSeq_Staph_11042012_11-04-2012_reversed.fasta]
    • Organism: Staphylococcus aureus subsp. aureus USA300_FPR3757
    Length: 145 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQTFMANES NIERKWYVID AEGQTLGRLS SEVASILRGK NKVTYTPHVD TGDYVIVINA  60
   61 SKIEFTGNKE TDKVYYRHSN HPGGIKSITA GELRRTNPER LIENSIKGML PSTRLGEKQG 120
  121 KKLFVYGGAE HPHAAQQPEN YELRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..145] PSI-BLAST 54.522879 70S ribosome functional complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  10.0286073270483 bayes_pls_golite062009
  • structural molecule activity
    		•  9.45133141168812 bayes_pls_golite062009
  • binding
    		•  1.22159759850364 bayes_pls_golite062009
  • RNA binding
    		•  0.840527362301162 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.513360853458228 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle