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Protein Overview: gi|23296847, gi|...

General Information:
Name(s) found: gi|30681531 [NCBI NR]
gi|23296847 [NCBI NR]
gi|13430572 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|30681531|ref|NP_850783.1| UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana] [NCBI NR]
  • gi|23296847|gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] [NCBI NR]
  • gi|13430572|gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1115 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI  60
   61 PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY LDVSDAASLP YGWSRYAQFS 120
  121 LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV 180
  181 RKVLDYWSYD SKKETGFVGL KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS 240
  241 IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV 300
  301 VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG 360
  361 DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR DTMVKINDRY EFPLELDLDR 420
  421 EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL 480
  481 KRALEEQYGG EEELPQTNPG FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE 540
  541 HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI 600
  601 QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN 660
  661 KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP EKAVLSYAGR LMVKSSSKPM 720
  721 DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN 780
  781 KEIECLYPAV PSFLEYVQNR QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD 840
  841 DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK 900
  901 TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI 960
  961 FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH FAKETGQNQQ VQNFGEPFFL1020
 1021 VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA1080
 1081 FEQYLGLEHA DTTPKRAYAA NQNRHAYEKP VKIYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..591] PSI-BLAST 76.154902 Crystal structure of HAUSP
    2 View Details [592..680] deduced N/A No confident structure predictions are available.
    3 View Details [681..853] deduced N/A No confident structure predictions are available.
    4 View Details [854..992] MSA 1.148995 View MSA. No confident structure predictions are available.
    5 View Details [993..1115] MSA 1.117977 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle