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Protein Overview: ALFL7_ARATH

General Information:
Name(s) found: ALFL7_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30017229|gb|AAP12848.1| At1g14510 [Arabidopsis thaliana] [NCBI NR]
  • gi|21593666|gb|AAM65633.1| nucleic acid binding protein (alfin-1), putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15223786|ref|NP_172903.1| AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding [Arabidopsis thaliana] [NCBI NR]
  • gi|110736110|dbj|BAF00027.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1 [Swiss-Prot]
  • At1g14510 [Arabidopsis thaliana]gi|21593666|gb|AAM65633.1| nucleic acid binding protein (alfin-1), putative [Arabidopsis thaliana]gi|15223786|ref|NP_172903.1| PHD finger family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PHD finger family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | PHD finger family protein | chr1:4962166-4964149 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g14510 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding protein (alfin-1), putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AL7 | alfin-like 7 | chr1:4962171-4964154 REVERSE LENGTH=252 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    methylated histone residue binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV  60
   61 NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS WLISVAFYFG ARFGFGKNER 120
  121 KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR 180
  181 KEDESGDEDE DDEQGAVCGA CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK 240
  241 CPSCTTSKKM KA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] MSA 5.344996 View MSA. No confident structure predictions are available.
    2 View Details [169..252] PSI-BLAST 10.221849 Solution structure of PHD domain in nucleic acid binding protein-like NP_197993

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle