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Protein Overview: PDX2_ARATH

General Information:
Name(s) found: PDX2_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Probable pyridoxal 5'-phosphate synthase subunit PDX2 OS=Arabidopsis thaliana GN=PDX2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 255 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDA]
    Biological Process: pyridoxine biosynthetic process [ISS]
    embryonic development ending in seed dormancy [NAS]
    vitamin B6 biosynthetic process [IGI][IMP]
    Molecular Function: glutaminase activity [IDA][ISS]
    protein heterodimerization activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL  60
   61 FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG GLDCTVHRNF FGSQIQSFEA 120
  121 DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED 180
  181 ALPETKVIVA VKQGNLLATA FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET 240
  241 SAGPEPAKPD LPIFQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..255] PSI-BLAST 37.0 X-ray crystallographic analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.30391542469987 bayes_pls_golite062009
  • binding
    		•  0.799270855996775 bayes_pls_golite062009
  • ligase activity
    		•  0.606811845310629 bayes_pls_golite062009
  • anthranilate synthase activity
    		•  0.198608229600186 bayes_pls_golite062009
  • protein binding
    		•  0.0152024556625711 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle