YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|18379230, gi|...

General Information:
Name(s) found: gi|21593463 [NCBI NR]
gi|20259567 [NCBI NR]
gi|18379230 [NCBI NR]
gi|15810565 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|21593463|gb|AAM65430.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|20259567|gb|AAM14126.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18379230|ref|NP_563700.1| PRP39; binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15810565|gb|AAL07170.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown [Arabidopsis thaliana]gi|20259567|gb|AAM14126.1| unknown protein [Arabidopsis thaliana]gi|15810565|gb|AAL07170.1| unknown protein [Arabidopsis thaliana]gi|18379230|ref|NP_563700.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • | Symbols: PRP39 | PRP39; binding | chr1:1051802-1056549 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1051803-1056550 FORWARD LENGTH=768 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Pre-mRNA-processing factor 39 OS=Arabidopsis thaliana GN=PRP39 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4I448, Pre-mRNA-processing factor 39 OS=Arabidopsis thaliana GN=PRP39 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 768 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: regulation of timing of transition from vegetative to reproductive phase [IMP]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSEAMVSE GYTSAPYGDY NASAATVEST GQETAPIVDA SHSVNNDSLV NGTAPVENGS  60
   61 ATDNVAVTAP AAEHGDNTGS TLSTEEERLW NIVRANSLEF NAWTALIDET ERIAQDNIAK 120
  121 IRKVYDAFLA EFPLCYGYWK KFADHEARVG AMDKVVEVYE RAVLGVTYSV DIWLHYCTFA 180
  181 INTYGDPETI RRLFERALVY VGTDFLSSPL WDKYIEYEYM QQDWSRVALI YTRILENPIQ 240
  241 NLDRYFSSFK ELAETRPLSE LRSAEESAAA AVAVAGDASE SAASESGEKA DEGRSQVDGS 300
  301 TEQSPKLESA SSTEPEELKK YVGIREAMYI KSKEFESKII GYEMAIRRPY FHVRPLNVAE 360
  361 LENWHNYLDF IERDGDFNKV VKLYERCVVT CANYPEYWIR YVTNMEASGS ADLAENALAR 420
  421 ATQVFVKKQP EIHLFAARLK EQNGDIAGAR AAYQLVHSEI SPGLLEAVIK HANMEYRLGN 480
  481 LDDAFSLYEQ VIAVEKGKEH STILPLLYAQ YSRFSYLVSR DAEKARRIIV EALDHVQPSK 540
  541 PLMEALIHFE AIQPPPREID YLEPLVEKVI KPDADAQNIA SSTEREELSL IYIEFLGIFG 600
  601 DVKSIKKAED QHVKLFYPHR STSELKKRSA DDFLASDRTK MAKTYNGTPP AQPVSNAYPN 660
  661 AQAQWSGGYA AQPQTWPPAQ AAPAQPQQWN PAYGQQAAYG AYGGYPAGYT APQAPTPVPQ 720
  721 AAAYGAYPAQ TYPTQSYAPP VAAAAPAAAP VQQPAAAVAP QAYYNTYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] deduced N/A No confident structure predictions are available.
    2 View Details [70..629] PSI-BLAST 60.0 No description for 2ooeA was found.
    3 View Details [630..768] PSI-BLAST 29.39794 No description for 1y0fB was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle