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Protein Overview: ALFL4_ARATH

General Information:
Name(s) found: ALFL4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|87116584|gb|ABD19656.1| At5g26210 [Arabidopsis thaliana] [NCBI NR]
  • gi|73921146|sp|O81488.2|Y5621_ARATH RecName: Full=PHD finger protein At5g26210 [NCBI NR]
  • gi|225898935|dbj|BAH30598.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21592780|gb|AAM64729.1| nucleic acid binding protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15239624|ref|NP_197993.1| AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding [Arabidopsis thaliana] [NCBI NR]
  • PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2 [Swiss-Prot]
  • PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2 [Swiss-Prot]
  • nucleic acid binding protein-like [Arabidopsis thaliana]gi|15239624|ref|NP_197993.1| PHD finger family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PHD finger protein At5g26210 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | PHD finger family protein | chr5:9158569-9160224 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PHD finger protein At5g26210 [nr-271106-contam.fasta]
  • DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g26210 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AL4 | alfin-like 4 | chr5:9158566-9160221 REVERSE LENGTH=255 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 255 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    methylated histone residue binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV  60
   61 NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA WLLAVAFFFG ARFGFDKADR 120
  121 KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD 180
  181 DEEEEEEGVE EEDEDEQGET QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI 240
  241 KQYKCPSCSN KRARS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] MSA 5.321991 View MSA. Confident ab initio structure predictions are available.
    2 View Details [111..197] deduced N/A No confident structure predictions are available.
    3 View Details [198..255] PSI-BLAST 11.154902 Solution structure of PHD domain in nucleic acid binding protein-like NP_197993

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.56

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle