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Protein Overview: gi|18413971, gi|...

General Information:
Name(s) found: gi|21553360 [NCBI NR]
gi|18413971 [NCBI NR]
Description(s) found:
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  • gi|21553360|gb|AAM62453.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18413971|ref|NP_568104.1| chloroplast lumen common family protein [Arabidopsis thaliana] [NCBI NR]
  • unknown [Arabidopsis thaliana]gi|18413971|ref|NP_568104.1| chloroplast lumen common family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | chloroplast lumen common family protein | chr5:583115-584095 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:583117-584097 FORWARD LENGTH=326 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Tetratricopeptide repeat domain-containing protein OS=Arabidopsis thaliana GN=At5g02590 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 326 amino acids

    Gene Ontology:
    Cellular Component: chloroplast thylakoid lumen [ISS]
    Biological Process: NONE FOUND
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLAKFHYC DQTLHLRLDT HRKPQPKPVS YRILHKPPPS RVIRASSFSS NPKPSFLKTT  60
   61 CVTLTTAAAL LSASLHLSTK PVTAATLVSP PPPPSTAADL TSDQISSRPK EEEEEAALEK 120
  121 HLTKNPNDVE ALQSLMKIKF QTKNIDHALE ILNRLIEIQP EEQEWRILKA QVQTYGGDFD 180
  181 SATKGFEEVL SKDPFRVEAY HGLVMAYSES ESKLSEIESR INEAIEKCKK ENKKDFRDFM 240
  241 LLIAQIRVIK GNPIEALRVY QELVKDEPKD FRPYLCQGLI YTLMKKKDEA EKQFAEFRRL 300
  301 VPENHPYKEY LDANVLNTNK LFAKNQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..326] PSI-BLAST 55.39794 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle