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Protein Overview: AB2E_ARATH

General Information:
Name(s) found: AB2E_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75330288|sp|Q8LPJ4.1|AB2E_ARATH RecName: Full=ABC transporter E family member 2; Short=ABC transporter ABCE.2; Short=AtABCE2; AltName: Full=RNase L inhibitor-like protein 2; Short=AthaRLI2; Short=AtRLI2 [NCBI NR]
  • gi|23198180|gb|AAN15617.1| RNase L inhibitor-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22328793|ref|NP_193656.2| ATRLI2; transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|20466462|gb|AAM20548.1| RNase L inhibitor-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110742163|dbj|BAE99009.1| RNase L inhibitor-like protein [Arabidopsis thaliana] [NCBI NR]
  • ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1 [Swiss-Prot]
  • RNase L inhibitor-like protein [Arabidopsis thaliana]gi|20466462|gb|AAM20548.1| RNase L inhibitor-like protein [Arabidopsis thaliana]gi|22328793|ref|NP_193656.2| RNase L inhibitor protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNase L inhibitor protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATRLI2 | ATRLI2 (Arabidopsis thaliana RNase L inhibitor protein 2) | chr4:10501917-10504787 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATRLI2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNase L inhibitor-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATRLI2, RLI2 | RNAse l inhibitor protein 2 | chr4:10501906-10504776 FORWARD LENGTH=605 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 605 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI  60
   61 CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP RPGQVLGLVG TNGIGKSTAL 120
  121 KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV 180
  181 KGNVGEVLDQ KDERDKKAEL CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF 240
  241 DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT 300
  301 LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG 360
  361 NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP DDTEGPDREI PEFNVSYKPQ 420
  421 KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL 480
  481 CLGKPADIYL IDEPSAYLDS EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV 540
  541 YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY 600
  601 YYLDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] FFAS03 2.46 Ferredoxin
    2 View Details [75..605] PSI-BLAST 101.0 RNase-L Inhibitor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • NADH dehydrogenase activity
    		•  1.60623439980539 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  1.53817463426614 bayes_pls_golite062009
  • binding
    		•  1.53159718897813 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  1.4234769358917 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.874282617332514 bayes_pls_golite062009
  • transporter activity
    		•  0.768779013335823 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.519838051435455 bayes_pls_golite062009
  • catalytic activity
    		•  0.481338897251745 bayes_pls_golite062009
  • protein binding
    		•  0.247801183125276 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle