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Protein Overview: gi|18420587, gi|...

General Information:
Name(s) found: gi|22136778 [NCBI NR]
gi|18420587 [NCBI NR]
gi|14532780 [NCBI NR]
Description(s) found:
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  • gi|22136778|gb|AAM91733.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18420587|ref|NP_568079.1| signal transducer [Arabidopsis thaliana] [NCBI NR]
  • gi|14532780|gb|AAK64171.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|14532780|gb|AAK64171.1| unknown protein [Arabidopsis thaliana]gi|18420587|ref|NP_568079.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | signal transducer | chr4:18561200-18563721 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Protein of unknown function (DUF3550/UPF0682) | chr4:18561206-18563727 REVERSE LENGTH=599 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At4g40050 OS=Arabidopsis thaliana GN=At4g40050 PE=2 SV=1 [ARATH-contam.fasta]
  • Putative uncharacterized protein At4g40050 OS=Arabidopsis thaliana GN=At4g40050 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 599 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: signal transducer activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEDVSSNF RALVENADRK FARVRDLPAF GRAQSHYFQK VFKAYMKLWN YQQSHRSKLV  60
   61 ESGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLEAFVFY EAILKRSYFD EAQGKDLGAR 120
  121 FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI 180
  181 ESDTNLTYLR PLRYCAMLDS YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD 240
  241 TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA 300
  301 ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL 360
  361 ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG SNNLYPGDLI PFTRKPLFLI 420
  421 IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC 480
  481 QMLGLSNTKP DPELCDEAES ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI 540
  541 FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [89..230] MSA 2.019972 View MSA. Confident ab initio structure predictions are available.
    3 View Details [231..388] deduced N/A No confident structure predictions are available.
    4 View Details [389..446] MSA 1.013992 View MSA. No confident structure predictions are available.
    5 View Details [447..599] MSA 2.014948 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle