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Protein Overview: gi|17381206, gi|...

General Information:
Name(s) found: gi|42571997 [NCBI NR]
gi|20465811 [NCBI NR]
gi|17381206 [NCBI NR]
gi|15217686 [NCBI NR]
Description(s) found:
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  • gi|42571997|ref|NP_974089.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20465811|gb|AAM20010.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17381206|gb|AAL36415.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15217686|ref|NP_176642.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|17381206|gb|AAL36415.1| unknown protein [Arabidopsis thaliana]gi|15217686|ref|NP_176642.1| WD-40 repeat family protein [Arabidopsis thaliana]gi|42571997|ref|NP_974089.1| WD-40 repeat family protein [Arabidopsis [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 WD-40 repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | WD-40 repeat family protein | chr1:24002583-24004960 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:23998920-24001297 REVERSE LENGTH=647 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At1g64610 OS=Arabidopsis thaliana GN=At1g64610 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 647 amino acids

    Gene Ontology:
    Cellular Component: heterotrimeric G-protein complex [ISS]
    Biological Process: signal transduction [ISS]
    Molecular Function: signal transducer activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPGDEEDE DRFFDAPEVV SDDFGLHLWT STPESVSTRR RKFLQSMGLS FKKTATDDDS  60
   61 EDELEPSHTD SNVVSEVVNV SSGVKEIDLL VRNESTTSSG FDVSSVSSSD TDDQTLLARN 120
  121 DASSSTSTMP GGLSESSSSK SGSFGDFHNS PFSQRDDLLK KGAKSWLKKL GVLTHVLESM 180
  181 DCESVRTQLH QVARVQTHKK QFKELSSMCI DQEFSAHDGS ILAMKFSPDG KYIASAGEDC 240
  241 VVRVWSITEE ERTDTYEVAE VDSGVYFGMN QRSQIEPLKI NNEKTEKKSS FLRKSSDSTC 300
  301 VVLPPTIFSI SEKPLHEFKG HIGEILDLSW SEKGYLLSSS VDETVRLWRV GCDECLRTFT 360
  361 HNNFVTCVAF NPVDDNYFIS GSIDGKVRIW DVTRCRVVDY TDIRDIVTAV CYRPDAKGAV 420
  421 IGSMTGNCRF YHIFENQLQM DQEINVHGKK KVASKRISGL QYLPSDSDSD KVMVTSADSQ 480
  481 IRIICGEDVI CKLKASSLRT TSASFISDGK HIISTSEDSY INVWSYSQLP SKKPYSETPK 540
  541 SIRSYEGFLS HNASVAIPWL RQGRRDGLSE CITDLDMKIP KVDCFSPMKG STTWPEEKLE 600
  601 DVAMSNRGKL KLLRSAWQPH LWGLVIVTAT WDGRIRVFHN YGLPIRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] deduced N/A No confident structure predictions are available.
    2 View Details [81..477] PSI-BLAST 6.522879 Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2
    3 View Details [478..580] PSI-BLAST 6.154902 No description for 2oajA was found.
    4 View Details [581..647] PSI-BLAST 49.69897 F-box/WD-repeat protein 1 (beta-TRCP1)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle