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Protein Overview: NLAL1_ARATH

General Information:
Name(s) found: NLAL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|68565918|sp|Q8VZT0.1|NLAL1_ARATH RecName: Full=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [NCBI NR]
  • gi|20259633|gb|AAM14173.1| putative GAR1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18396707|ref|NP_566217.1| Gar1 RNA-binding region family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17380836|gb|AAL36230.1| putative GAR1 protein [Arabidopsis thaliana] [NCBI NR]
  • Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1 [Swiss-Prot]
  • putative GAR1 protein [Arabidopsis thaliana]gi|17380836|gb|AAL36230.1| putative GAR1 protein [Arabidopsis thaliana]gi|18396707|ref|NP_566217.1| Gar1 RNA-binding region family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Gar1 RNA-binding region family protein | chr3:1009130-1010386 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [nr-271106-contam.fasta]
  • RNA binding / rRNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative GAR1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | chr3:1009123-1010379 REVERSE LENGTH=202 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 202 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: rRNA processing [IEA]
    Molecular Function: RNA binding [ISS]
    rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPMRGGGG FRGRGGRDGG GGGRFGGGGG RFGGGGGRFG GGGGRFGGFR DEGPPSEVVE  60
   61 VATFVHACEG DAVTKLSQEK IPHFNAPIYL ENKTQIGKVD EIFGPINESL FSIKMMEGIV 120
  121 ATSYSPGDKF FIDPYKLLPL ARFLPQPKGQ STGGRGGAGR GRGDSRGRGR GGSFSRGRGA 180
  181 PRGGRFPPRG GSRGSFRGRG RF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] FFAS03 3.46 No description for 2v3mA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle