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Protein Overview: Y1028_ARATH

General Information:
Name(s) found: Y1028_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • BTB/POZ domain-containing protein At1g50280 OS=Arabidopsis thaliana GN=At1g50280 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 525 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to light stimulus [IEA][ISS]
    Molecular Function: protein binding [IEA]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLNDLKIN LNGQYTFFLN QNVISKYSGS LRKMIKQSKK KRNKKKRIIT IEINDFPGGP  60
   61 DGFELVSRFC YHNGEILIDV SNVSTLYCCS VFLGMSEKFC FSNLFLQTEK FLEEVFYGSW 120
  121 SDIVSCLKNC EQVFFQADSY GLVDKLIFAA LNKISQNSDD FSSSSLSSFA SSLSPEMAKN 180
  181 TSESDGRYIS RSVACGRSNE WWFEDMTNLS PKIILKLVMI IGAYKTNIKS LVLTRFLLHY 240
  241 LKTKLQTKSR TTTELMRNKL EYSDLADTAV RGVISAGTRT FSCRKLFWIL RVLSSFSLSR 300
  301 ESRIGLETLI GEMLEQATLD DLLISARGSR ESGFYNVDLV IRLLKVFVKN REEEEEESRE 360
  361 RNMKEIGKLI DKYLREISPD QNLKVPKFLG VAESLPDSAR DCFDGVYRAI DIYLQSHPNL 420
  421 TPQDRTEICR CLNYKKLTME TCKQLARNPK IPPEIAIEAL KSRCGNQEHT TSDVKVANKS 480
  481 FSCRYSEEKK KPVVLHLEIT EKLAERLKTK GGYNLKVMDS FREGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] PSI-BLAST 16.0 No description for 2nn2A was found.
    2 View Details [103..275] MSA 4.557991 View MSA. No confident structure predictions are available.
    3 View Details [276..379] MSA 2.219989 View MSA. Confident ab initio structure predictions are available.
    4 View Details [380..417] MSA 2.075986 View MSA. No confident structure predictions are available.
    5 View Details [418..525] MSA 6.068991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle