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Protein Overview: gi|18405465, gi|...

General Information:
Name(s) found: gi|18405465 [NCBI NR]
gi|16323444 [NCBI NR]
gi|14334468 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|18405465|ref|NP_565938.1| tRNA-binding region domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16323444|gb|AAL15216.1| putative methionyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|14334468|gb|AAK59432.1| putative methionyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 389 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: tRNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKAKQMIL SALCKHFSLD PEPFVGGAGE SDIKTLYSNV LKASGKEVSA QNNDVLKWLD  60
   61 FAEGFSSDSK DWFSALEKLN LELATKSVLL GNGLTPSAAD VAVFSALHSS VLGLSDSDKE 120
  121 KVPHVIRWVN YIQNKEELST LFAPIPVKLP EFSFEVPKPA IKVETNSNSK KAAEGVKPVD 180
  181 KPDVQPQLGT KKTEPEEPKK NAAKEKDAKK EKKKPAEPEP AKKEAELSVS LLNIQVGLIR 240
  241 KAWKHPSADS LLVEEIDVGE DKVRQVVSGL AKFCSPEDLT NRLVALITNV KPGKLRDVMS 300
  301 QGLVLCASSE DHSVVEPLLP PAGAKPGERV SFSGIEGKPE DVLNPKKKQL EKITPGLYTD 360
  361 ENGVATYKGI QFMTSAGPCT SSIPKATIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..324] PSI-BLAST 50.0 Methionyl-tRNA synthetase from Pyrococcus abyssi
    2 View Details [325..389] PSI-BLAST 44.09691 EMAP II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity
    		•  1.2614046341353 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  1.1325271210374 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  1.13081231655543 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  1.13081231655543 bayes_pls_golite062009
  • binding
    		•  1.12496911405027 bayes_pls_golite062009
  • protein binding
    		•  0.341429946042706 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle