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Protein Overview: USP_ARATH

General Information:
Name(s) found: USP_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|84181457|gb|ABC55066.1| nonspecific UDP-sugar pyrophosphorylase [Arabidopsis thaliana] [NCBI NR]
  • gi|75168956|sp|Q9C5I1.1|USP_ARATH RecName: Full=UDP-sugar pyrophosphorylase; Short=AtUSP [NCBI NR]
  • gi|18423407|ref|NP_568775.1| ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE); UTP-monosaccharide-1-phosphate uridylyltransferase/ UTP:arabinose-1-phosphate uridylyltransferase/ UTP:galactose-1-phosphate uridylyltransferase/ UTP:glucose-1-phosphat [NCBI NR]
  • gi|14532822|gb|AAK64093.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13430648|gb|AAK25946.1|AF360236_1 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • UDP-sugar pyrophosphorylase OS=Arabidopsis thaliana GN=USP PE=1 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|13430648|gb|AAK25946.1| unknown protein [Arabidopsis thaliana]gi|18423407|ref|NP_568775.1| UDP-N-acetylglucosamine pyrophosphorylase-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 This gene was shown to have sequence similarities with pea PsUSP gene, encoding an UDP-sugar pyrophosphorylase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATUSP | ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE); UTP-monosaccharide-1-phosphate uridylyltransferase/ UTP:arabinose-1-phosphate uridylyltransferase/ UTP:galactose-1-phosphate uridylyltransferase/ UTP:glucose-1-phosphate uridylyl [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nonspecific UDP-sugar pyrophosphorylase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATUSP | ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE); UTP-monosaccharide-1-phosphate uridylyltransferase/ UTP:arabinose-1-phosphate uridylyltransferase/ UTP:galactose-1-phosphate uridylyltransferase/ UTP:glucose-1-phosphate uridylyltransferase/ UTP:xy | chr5:21348456-21351799 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase | chr5:21331230-21334573 FORWARD LENGTH=614 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 614 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: response to cadmium ion [IEP]
    Molecular Function: glucuronate-1-phosphate uridylyltransferase activity [IDA]
    UTP:arabinose-1-phosphate uridylyltransferase activity [IDA]
    UTP:xylose-1-phosphate uridylyltransferase activity [IDA]
    UTP-monosaccharide-1-phosphate uridylyltransferase activity [ISS]
    UTP:galactose-1-phosphate uridylyltransferase activity [IDA]
    UTP:glucose-1-phosphate uridylyltransferase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVDSNFF SSVPALHSNL GLLSPDQIEL AKILLENGQS HLFQQWPELG VDDKEKLAFF  60
   61 DQIARLNSSY PGGLAAYIKT AKELLADSKV GKNPYDGFSP SVPSGENLTF GTDNFIEMEK 120
  121 RGVVEARNAA FVLVAGGLGE RLGYNGIKVA LPRETTTGTC FLQHYIESIL ALQEASNKID 180
  181 SDGSERDIPF IIMTSDDTHS RTLDLLELNS YFGMKPTQVH LLKQEKVACL DDNDARLALD 240
  241 PHNKYSIQTK PHGHGDVHSL LYSSGLLHKW LEAGLKWVLF FQDTNGLLFN AIPASLGVSA 300
  301 TKQYHVNSLA VPRKAKEAIG GISKLTHVDG RSMVINVEYN QLDPLLRASG FPDGDVNCET 360
  361 GFSPFPGNIN QLILELGPYK DELQKTGGAI KEFVNPKYKD STKTAFKSST RLECMMQDYP 420
  421 KTLPPTARVG FTVMDIWLAY APVKNNPEDA AKVPKGNPYH SATSGEMAIY RANSLILQKA 480
  481 GVKVEEPVKQ VLNGQEVEVW SRITWKPKWG MIFSDIKKKV SGNCEVSQRS TMAIKGRNVF 540
  541 IKDLSLDGAL IVDSIDDAEV KLGGLIKNNG WTMESVDYKD TSVPEEIRIR GFRFNKVEQL 600
  601 EKKLTQPGKF SVED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..614] PSI-BLAST 150.0 UDP-N-acetylglucosamine pyrophosphorylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uridylyltransferase activity
    		•  3.74072767898515 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  2.70047942699289 bayes_pls_golite062009
  • UTP:glucose-1-phosphate uridylyltransferase activity
    		•  2.65167602524122 bayes_pls_golite062009
  • UTP-monosaccharide-1-phosphate uridylyltransferase activity
    		•  2.46432078102948 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  2.33861720107822 bayes_pls_golite062009
  • transferase activity
    		•  2.17535315350752 bayes_pls_golite062009
  • catalytic activity
    		•  1.88676710996045 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.50551885980582 bayes_pls_golite062009
  • acetylgalactosaminyltransferase activity
    		•  1.33788133706753 bayes_pls_golite062009
  • polypeptide N-acetylgalactosaminyltransferase activity
    		•  1.10309252319727 bayes_pls_golite062009
  • mannosyltransferase activity
    		•  0.91123217364068 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.897978517422275 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.860956388523413 bayes_pls_golite062009
  • UDP-N-acetylglucosamine diphosphorylase activity
    		•  0.513376694534047 bayes_pls_golite062009
  • binding
    		•  0.34768004387991 bayes_pls_golite062009
  • mannose-phosphate guanylyltransferase activity
    		•  0.2363835251362 bayes_pls_golite062009
  • cytidylyltransferase activity
    		•  0.218759888732981 bayes_pls_golite062009
  • guanylyltransferase activity
    		•  0.0539392112504681 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle