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Protein Overview: gi|108711675, gi...

General Information:
Name(s) found: gi|50540754 [NCBI NR]
gi|108711675 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|50540754|gb|AAT77910.1| putative raffinose synthase or seed imbibition protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|108711675|gb|ABF99470.1| Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 771 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVTPRITVA EGRLVAHGRT ILTGVADNIA LTHASGAGLV DGAFVGATAD EPKSLHVFTF  60
   61 GTLRDLRFMC CFRFKLWWMT QRMGTSGRDV PLETQFMLLE SRDGGGGGEA VYVVMLPLLE 120
  121 GQFRAALQGN DRDELEICIE SGDKAVQTAQ GTYMVYVHAG ANPFDTITQA VKVVERHLQT 180
  181 FHHREKKKLP SFLDWFGWCT WDAFYTDVTA DGVKQGLQSL AEGGTPPRFL IIDDGWQQIG 240
  241 SENKEDAGNA VVQEGAQFAS RLIGIKENTK FQKTTTTAMA DGGETAASAA GLKALVEEAK 300
  301 KEHGVKYVYV WHAMAGYWGG VKPAAEGMEH YESAVAFPVQ SPGVMGNQPD IVMDSLSVLG 360
  361 LGLVHPRMAL AFYGELHAYL ASCGVDGVKV DAQNIIETLG AGHGGRVSLT RAFHRALEAS 420
  421 VARSFPDNGC ISCMCHNTDM LYSARQTAVV RASDDFYPLD PASHTIHISS VAYNTLFLGE 480
  481 FMQPDWDMFH SLHPAAEYHG AARAIGGCPI YVSDKPGNHN FELLKKLVLP DGSVLRARLP 540
  541 GRPTRDCLFV DPARDGASLL KIWNVNKCTG VVGVFNCQGA GWCRITKKTR VHDAAPGTLT 600
  601 GSVRADDVDA IADVAGTGWT GDAVVYAHRS GELIRLPKGA TLPVTLKVLE FELFHVCPVM 660
  661 TVAPGGGGGG VTFAPIGLLD MFNSGGAVEE CDVVRALDAA GEAEAEAEAA VVRLRARGCG 720
  721 RFGAYSSRRP ARCALDAVEV EFSYDADTGL VALDVPVPAH ELYKWTVEIQ V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] deduced N/A No confident structure predictions are available.
    2 View Details [195..504] PSI-BLAST 56.09691 Structure of human alpha-galactosidase
    3 View Details [505..665] FFAS03 1.01 Structure of human alpha-galactosidase
    4 View Details [666..771] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  3.24393624203556 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  3.00088487541785 bayes_pls_golite062009
  • catalytic activity
    		•  1.85569074294201 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.594299372544002 bayes_pls_golite062009
  • glucosidase activity
    		•  0.50219358960551 bayes_pls_golite062009
  • hydrolase activity
    		•  0.15436539680525 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.121443733937724 bayes_pls_golite062009
  • beta-N-acetylhexosaminidase activity
    		•  0.077523017622032 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle