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Protein Overview: gi|30680844, gi|...

General Information:
Name(s) found: gi|30680844 [NCBI NR]
gi|28372952 [NCBI NR]
gi|26453256 [NCBI NR]
Description(s) found:
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  • gi|30680844|ref|NP_849617.1| structural constituent of ribosome [Arabidopsis thaliana] [NCBI NR]
  • gi|28372952|gb|AAO39958.1| At1g08850 [Arabidopsis thaliana] [NCBI NR]
  • gi|26453256|dbj|BAC43701.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|28372952|gb|AAO39958.1| At1g08850 [Arabidopsis thaliana]gi|30680844|ref|NP_849617.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | structural constituent of ribosome | chr1:2839858-2840958 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g08850 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal L18p/L5e family protein | chr1:2839855-2840955 FORWARD LENGTH=189 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g08850 OS=Arabidopsis thaliana GN=At1g08845 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4HXR7, At1g08850 OS=Arabidopsis thaliana GN=At1g08845 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 189 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA]
    Molecular Function: structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQVVAKYS IGKAAIYGSN REKLRPFMCQ TSCRFHNGRT VFAPRSFFGV EDYVDDDTSR  60
   61 PYTYQKEKKS KNPDKHVSFK QRTVAYMEPF TLDVFISKRF VSASLTHRVT CRQVAVAGTN 120
  121 SKDVKAVLRS RCDIPACMSI GRILSERAKE ADVYTASYTP RDQDKFEGKI RAVVQSLIDN 180
  181 GIDVKIYLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] PSI-BLAST 36.39794 Solution Structure of Ribosomal Protein L18 from Bacillus stearothermophilus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural molecule activity
    		•  0.48427395152925 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.478479888797851 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle