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Protein Overview: gi|115646707, gi...

General Information:
Name(s) found: gi|26452881 [NCBI NR]
gi|18424981 [NCBI NR]
gi|115646707 [NCBI NR]
Description(s) found:
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  • gi|26452881|dbj|BAC43519.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18424981|ref|NP_569018.1| soluble glycogen synthase-related [Arabidopsis thaliana] [NCBI NR]
  • gi|115646707|gb|ABJ17089.1| At5g65685 [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|18424981|ref|NP_569018.1| soluble glycogen synthase-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Soluble glycogen synthase-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | soluble glycogen synthase-related | chr5:26290478-26293090 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At5g65685 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26273252-26275864 REVERSE LENGTH=460 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g65685 OS=Arabidopsis thaliana GN=At5g65685 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 460 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: NONE FOUND
    Molecular Function: starch synthase activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQATANLPTI WNLSLRGSSS KVHIVNPRHR KSHALHCLRS EGHEEFDNSQ KSLGQSSITK  60
   61 EAKHKDIWNL FREAQKNIMI LNKQRLAAVD ELEQLKKDKE ELLERINQLE AESQIVIKKD 120
  121 KSSLFWELLL RIDSMVINGL VNIEEASSMR KLVKEHEANI SVFPLDVLQQ GDAEILAELR 180
  181 RFTNKGKRNG LHVIHICTEM APLVSVGPLA SYITGLSCAL QEEGYMVEVI LPKYSTLDLD 240
  241 EIEGLREIEA DAYSYFDGQL HANRIWNGVV SGIGVTLIQP VYYSSMFSRD KVYGYQDDFD 300
  301 RFAYFSRASL DYIAKSGKQP DVLHIHNWQT AIVGPLFWDV FVNQGLEGTR ILLTCQDFDK 360
  361 GLVPPEKLEL CGLDPAELHR LDRLQDNTNP HFVNILKGGV VYSNKVVIMS SSHSSIPGLE 420
  421 PTLAIHKDKL FFAPFGMDNS MEKDLCCDLH VSAYTSIKNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] FFAS03 1.02 Fibrinogen
    2 View Details [191..460] PSI-BLAST 55.69897 Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  2.12142599404571 bayes_pls_golite062009
  • transferase activity
    		•  1.04894606863363 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.929172049566779 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.18186445930239 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle