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Protein Overview: NRPBA_ARATH

General Information:
Name(s) found: NRPBA_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana GN=NRPB10 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 71 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase IV complex [IPI]
    DNA-directed RNA polymerase V complex [IPI]
    DNA-directed RNA polymerase II, core complex [IPI]
    Biological Process: transcription [IEA][ISS]
    regulation of transcription [IEA]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIPVRCFTC GKVIGNKWDQ YLDLLQLDYT EGDALDALQL VRYCCRRMLM THVDLIEKLL  60
   61 NYNTLEKSDN S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..71] PSI-BLAST 28.0 RNA polymerase subunit RPB10

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.75117285798821 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.75117285798821 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  6.19778374025439 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.14604589390528 bayes_pls_golite062009
  • transferase activity
    		•  3.67290653698956 bayes_pls_golite062009
  • binding
    		•  1.92719310476535 bayes_pls_golite062009
  • catalytic activity
    		•  0.740488970089403 bayes_pls_golite062009
  • protein binding
    		•  0.445041376423941 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle