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Protein Overview: gi|18398265, gi|...

General Information:
Name(s) found: gi|28973361 [NCBI NR]
gi|26451726 [NCBI NR]
gi|18398265 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 519 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: NONE FOUND
    Molecular Function: D-alanine-D-alanine ligase activity [IEA]
    ATP binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMATGVSF SMTSGIGEGG YDVHRVATAA RTTLKLNQKN SLSESTCMLL GMNKYRGSGA  60
   61 IRTVSKAVGY GQEMSKSLRV GLICGGPSAE RGISLNSARS VLDHIQGDGI NVSCYYIDPD 120
  121 LKAFAISSAQ VYSNTPSDFD FKLESLAQGF SSLSELAEHL VSAVDIVFPV IHGRFGEDGG 180
  181 IQELLESHNI PFVGTGSREC FRAFDKYEAS LELKELGFMT VPNYLVQGTG VDKSEIALWF 240
  241 TDNQLDLEMG KVVVKPAKAG SSIGVKVAFG VNDSIKKATE LILEGIDDRV VVEVFIEDAY 300
  301 EFTAIVLDVG SGSVCHPVVL MPTEVQLQFH GIGDPKENAI FDYRRKYLPT QQVTYHTPPR 360
  361 FPIHVIKSIR EEASLIFQKL GLRDFARIDG WYLAPNSNLS SPVSETLGGT KSGDIIFTDI 420
  421 NLISGMEQTS FLFQQASKVG FSHSNILRTI VHRACSRFPH LDWYNYGYSQ LLQGSTTLEV 480
  481 SEDPQKVFVI FGGDTSERQV SVMSGTNVWV NLQRYVDVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..519] PSI-BLAST 75.69897 Carbamoyl phosphate synthetase, large subunit connection domain; Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain; Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains; Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.87139587563481 bayes_pls_golite062009
  • D-alanine-D-alanine ligase activity
    		•  1.88295354007688 bayes_pls_golite062009
  • ligase activity
    		•  1.70071261805297 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.43012336035246 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.463643664297841 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.57

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle