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Protein Overview: IF1C_ARATH

General Information:
Name(s) found: IF1C_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Translation initiation factor IF-1, chloroplastic OS=Arabidopsis thaliana GN=At4g11175 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 141 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: translational initiation [IEA]
    Molecular Function: translation initiation factor activity [IEA]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK  60
   61 PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG YICGKIRKNF IRILPGDKVK 120
  121 VEMSVYDSTK GRIIFRMSSR D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 27.0 THE STRUCTURE OF THE TRANSLATIONAL INITIATION FACTOR IF1 FROM ESCHERICHIA COLI, NMR, 19 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation initiation factor activity
    		•  3.7577199572893 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.65948797337693 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.48826676464117 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20191382777151 bayes_pls_golite062009
  • binding
    		•  0.902189695502298 bayes_pls_golite062009
  • DNA binding
    		•  0.9001707539121 bayes_pls_golite062009
  • translation regulator activity
    		•  0.75912526777056 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.71309127606641 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle