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Protein Overview: gi|22137126, gi|...

General Information:
Name(s) found: gi|22137126 [NCBI NR]
gi|18417554 [NCBI NR]
gi|16226657 [NCBI NR]
Description(s) found:
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  • gi|22137126|gb|AAM91408.1| At4g30240/F9N11_90 [Arabidopsis thaliana] [NCBI NR]
  • gi|18417554|ref|NP_567842.1| protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|16226657|gb|AAL16225.1|AF428456_1 AT4g30240/F9N11_90 [Arabidopsis thaliana] [NCBI NR]
  • At4g30240/F9N11_90 [Arabidopsis thaliana]gi|16226657|gb|AAL16225.1| AT4g30240/F9N11_90 [Arabidopsis thaliana]gi|18417554|ref|NP_567842.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | protein binding | chr4:14808365-14809751 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT4g30240/F9N11_90 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At4g30240/F9N11_90 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Syntaxin/t-SNARE family protein | chr4:14808359-14809745 REVERSE LENGTH=300 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT4g30240/F9N11_90 OS=Arabidopsis thaliana GN=At4g30240 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 300 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    endomembrane system [IEA]
    Biological Process: vesicle-mediated transport [IEA]
    Golgi vesicle transport [IEA]
    Molecular Function: protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL  60
   61 STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ IYQVESTLLE SLSENGKQPL 120
  121 RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD 180
  181 SPDCVIDIDD IGSPESADKK GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED 240
  241 TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT 300
  301

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 27.221849 Syntaxin 6, SNAP-25 homolog
    2 View Details [120..208] PSI-BLAST 11.0 No description for 2npsD was found.
    3 View Details [209..300] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.068037611730119 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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