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Protein Overview: gi|18398425, gi|...

General Information:
Name(s) found: gi|22136582 [NCBI NR]
gi|18398425 [NCBI NR]
gi|15146210 [NCBI NR]
Description(s) found:
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  • gi|22136582|gb|AAM91077.1| AT3g09210/F3L24_8 [Arabidopsis thaliana] [NCBI NR]
  • gi|18398425|ref|NP_566346.1| PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator [Arabidopsis thaliana] [NCBI NR]
  • gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana] [NCBI NR]
  • AT3g09210/F3L24_8 [Arabidopsis thaliana]gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]gi|18398425|ref|NP_566346.1| KOW domain-containing transcription factor family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 KOW domain-containing transcription factor family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PTAC13 | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator | chr3:2825428-2826856 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT3g09210/F3L24_8 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcriptional elongation regulator [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PTAC13 | plastid transcriptionally active 13 | chr3:2825422-2826850 REVERSE LENGTH=333 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g09210/F3L24_8 OS=Arabidopsis thaliana GN=PTAC13 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 333 amino acids

    Gene Ontology:
    Cellular Component: nucleoid [IDA]
    plastid chromosome [IDA]
    Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter [IEA]
    Molecular Function: transcription elongation regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKLQGGLLQ WSRSSLIPSI YTPINKTQFS IAACVIERNH QLTAKERRQL RNERRESKLG  60
   61 YSWREEVEEK LIKKPKKRYA TWTEELNLDT LAESGPQWWA VRVSRLRGHE TAQILARALA 120
  121 RQFPEMEFTV YAPSVQVKRK LKNGSISVKP KPVFPGCIFI RCILNKEIHD SIRDVDGVGG 180
  181 FIGSKVGNTK RQINKPRPVD DSDLEAIFKQ AKEAQEKADS EFEEADRAEE EASILASQEL 240
  241 LALSNSDVIE TVAESKPKRA PRKATLATET KAKKKKLAAG STVRVLSGTF AEFVGNLKKL 300
  301 NRKTAKATVG FTLFGKETLV EIDINELVPE IQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] deduced N/A No confident structure predictions are available.
    2 View Details [96..333] PSI-BLAST 29.69897 N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle