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Protein Overview: gi|17473611, gi|...

General Information:
Name(s) found: gi|30688079 [NCBI NR]
gi|22136124 [NCBI NR]
gi|17473611 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|30688079|ref|NP_849466.1| pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22136124|gb|AAM91140.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17473611|gb|AAL38271.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 404 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: D-ribose metabolic process [IEA]
    Molecular Function: ribokinase activity [IEA]
    kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCFTHVPPL PLFSTSGIYL PASRRFTSFR IRMSSSSSID SVPPPPDNAI VLGCGGIAVD  60
   61 FLATVDSYPQ ADDKIRSTSL KVQGGGNAAN ALTCAARLGL NSRLISKVAN DSQGKGMLEE 120
  121 LEADGVDTSF IVVSKEGNSP FTYILVDNQT KTRTCIHTPG DPPMLPTDLS QSSMLSALDR 180
  181 ASIVYFDVRL HETALVIAKE ASRKKIPILV DTEKKRDGLD DLLPFADYVV CPENFPQTWT 240
  241 EVSSTPGALV SMLLRLPKLK FVIVTSGEHG CLMVQRASKA EVFESQETDI ESLLETLKHR 300
  301 KDSTTTFPTC VSSETTKLKA NGVGTMTGRL FLGTAEKIPP EELVDTTGAG DAFIGAVLYA 360
  361 ICAGMPPEKM LPFAAQVAGC SCRALGARTG LPHRTDPRLV PFLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..341] PSI-BLAST 61.522879 Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution
    2 View Details [342..404] FFAS03 2.61 No description for 2qcvA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • carbohydrate kinase activity
    		•  2.49008585493084 bayes_pls_golite062009
  • kinase activity
    		•  1.79764877020265 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.76920567844369 bayes_pls_golite062009
  • catalytic activity
    		•  1.74474587246986 bayes_pls_golite062009
  • transferase activity
    		•  1.38207816260569 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.218305857130342 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle