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Protein Overview: JMJ30_ARATH

General Information:
Name(s) found: JMJ30_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30685945|ref|NP_850617.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21928039|gb|AAM78048.1| AT3g20810/MOE17_10 [Arabidopsis thaliana] [NCBI NR]
  • gi|20147203|gb|AAM10317.1| AT3g20810/MOE17_10 [Arabidopsis thaliana] [NCBI NR]
  • Putative lysine-specific demethylase JMJD5 OS=Arabidopsis thaliana GN=JMJD5 PE=2 SV=1 [Swiss-Prot]
  • AT3g20810/MOE17_10 [Arabidopsis thaliana]gi|20147203|gb|AAM10317.1| AT3g20810/MOE17_10 [Arabidopsis thaliana]gi|30685945|ref|NP_850617.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor jumonji (jmjC) domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr3:7275820-7278150 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT3g20810/MOE17_10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: JMJD5 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7275814-7278144 FORWARD LENGTH=429 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g20810/MOE17_10 OS=Arabidopsis thaliana GN=At3g20810 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 429 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGATTASSG DHNNLRLPTP TLDAESQTLL QSISAEGGYA YARMAVLAVA GDQSAAEAAR  60
   61 DMAWEQLHSG PWHSVLPVWR DAYSMACLHV AKIHFAAGEF GEALGALDMG LIMGGMLLRK 120
  121 DLHDSVLLVS SEARKMTKSL EEASGDFKGE RLVPEVPVDV NEVRHVLANL QLLVLKILPC 180
  181 RSLTCKRVEK RSGLSLEGFL RDYYLPGTPV VITNSMAHWP ARTKWNHLDY LNAVAGNRTV 240
  241 PVEVGKNYLC SDWKQELVTF SKFLERMRTN KSSPMEPTYL AQHPLFDQIN ELRDDICIPD 300
  301 YCFVGGGELQ SLNAWFGPAG TVTPLHHDPH HNILAQVVGK KYIRLYPSFL QDELYPYSET 360
  361 MLCNSSQVDL DNIDETEFPK AMELEFMDCI LEEGEMLYIP PKWWHYVRSL TMSLSVSFWW 420
  421 SNEAESSSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [145..429] PSI-BLAST 41.522879 Hypoxia-inducible factor HIF ihhibitor (FIH1)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle