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Protein Overview: gi|29028776, gi|...

General Information:
Name(s) found: gi|29028776 [NCBI NR]
gi|15228185 [NCBI NR]
Description(s) found:
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  • gi|29028776|gb|AAO64767.1| At3g16350 [Arabidopsis thaliana] [NCBI NR]
  • gi|15228185|ref|NP_188256.1| myb family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • At3g16350 [Arabidopsis thaliana]gi|15228185|ref|NP_188256.1| myb family transcription factor [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | myb family transcription factor | chr3:5547834-5549403 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g16350 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Homeodomain-like superfamily protein | chr3:5547828-5549397 FORWARD LENGTH=387 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g16350 OS=Arabidopsis thaliana GN=At3g16350 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to gibberellin stimulus [IEP]
    response to salt stress [IEP]
    response to jasmonic acid stimulus [IEP]
    response to cadmium ion [IEP]
    regulation of transcription [TAS]
    response to ethylene stimulus [IEP]
    response to auxin stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRRCSHCSN NGHNSRTCPT RGGGTCGGSG GGGGGGGGGG SGSSSAVKLF GVRLTDGSII  60
   61 KKSASMGNLS ALAVAAAAAT HHRLSPSSPL ATSNLNDSPL SDHARYSNLH HNEGYLSDDP 120
  121 AHGSGSSHRR GERKRGVPWT EEEHRLFLVG LQKLGKGDWR GISRNYVTSR TPTQVASHAQ 180
  181 KYFIRHTSSS RRKRRSSLFD MVTDEMVTDS SPTQEEQTLN GSSPSKEPEK KSYLPSLELS 240
  241 LNNTTEAEEV VATAPRQEKS QEAIEPSNGV SPMLVPGGFF PPCFPVTYTI WLPASLHGTE 300
  301 HALNAETSSQ QHQVLKPKPG FAKERVNMDE LVGMSQLSIG MATRHETETS PSPLSLRLEP 360
  361 SRPSAFHSNG SVNGADLSKG NSAIQAI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] MSA 1.302987 View MSA. No confident structure predictions are available.
    2 View Details [134..228] PSI-BLAST 25.221849 c-Myb, DNA-binding domain
    3 View Details [229..387] MSA 3.561993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.41

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle