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Protein Overview: shep-PA

General Information:
Name(s) found: shep-PA / FBpp0076875 [FlyBase]
Description(s) found:
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  • gi|75017119|sp|Q8MSV2.1|SHEP_DROME RecName: Full=Protein alan shepard [NCBI NR]
  • gi|62484450|ref|NP_729054.3| alan shepard, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|61678484|gb|AAF50788.5| alan shepard, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21428546|gb|AAM49933.1| LD40028p [Drosophila melanogaster] [NCBI NR]
  • Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1 [Swiss-Prot]
  • The gene alan shepard is referred to in FlyBase by the symbol Dmel\shep (CG32423, FBgn0052423). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:5153786..5271044. It has the cytological map location 64C8-64C11. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: gravitaxis. 43 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
  • LD40028p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:complement(5155567..5155710,5156067..5156249,5156445..5156803,5156934..5157075,5160068..5160159,5161344..5161402,5163287..5163540,5212050..5212385,5269255..5269422); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref [fly-100309-contam.fasta]
  • CG32423-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • alan shepard CG32423-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:complement(5155567..5155710,5156067..5156249,5156445..5156803,5156934..5157075,5160068..5160159,5161344..5161402,5163287..5163540,5212050..5212385,5269255..5269422); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(5155567..5155710,5156067..5156249,5156445..5156803,5156934..5157075,5160068..5160159,5161344..5161402,5163287..5163540,5212050..5212385,5269255..5269422); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3L:complement(5155567..5155710,5156067..5156249,5156445..5156803,5156934..5157075,5160068..5160159,5161344..5161402,5163287..5163540,5212050..5212385,5269255..5269422); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788,FlyMine:FBpp0076875,modMine:FBpp0076875; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(join(5276155..5276322,5218950..5219285,5170187..5170440,5168244..5168302,5166968..5167059,5163834..5163975,5163345..5163703,5162967..5163149,5162467..5162610)); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788,FlyMine:FBpp0076875,modMine:FBpp0076875; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(5276155..5276322,5218950..5219285,5170187..5170440,5168244..5168302,5166968..5167059,5163834..5163975,5163345..5163703,5162967..5163149,5162467..5162610)); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788,FlyMine:FBpp0076875,modMine:FBpp0076875; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q8MSV2, Isoform A of Protein alan shepard OS=Drosophila melanogaster GN=shep [DROME.fasta.20160308]
  • FBpp0076875 type=protein; loc=3L:complement(join(5276155..5276322,5218950..5219285,5170187..5170440,5168244..5168302,5166968..5167059,5163834..5163975,5163345..5163703,5162967..5163149,5162467..5162610)); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788,FlyMine:FBpp0076875,modMine:FBpp0076875; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:complement(join(5276155..5276322,5218950..5219285,5170187..5170440,5168244..5168302,5166968..5167059,5163834..5163975,5163345..5163703,5162967..5163149,5162467..5162610)); ID=FBpp0076875; name=shep-PA; parent=FBgn0052423,FBtr0077172; dbxref=GB_protein:AAF50788.4,FlyBase_Annotation_IDs:CG32423-PA,FlyBase:FBpp0076875,GB_protein:AAF50788.5,REFSEQ:NP_729054,GB_protein:AAF50788,FlyMine:FBpp0076875,modMine:FBpp0076875; MD5=b487abd54e904ba3febf3426e9f707cd; length=578; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 578 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: gravitaxis [IMP]
    Molecular Function: nucleotide binding [IEA]
    RNA binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPRYSPAPP PQQQQQMGGP PHQQQGGGGG GGVSMRGPSN AQQLPPQIPR SQNYSNGSSS  60
   61 SAAAAPLTSR SAFPGAPLTA SAVALKGALP QRPPAMTSPA AAAAGAALAA GAPYRGAASW 120
  121 TPQGYAPAAA AAAAAVAQQA AYRYTAPLPQ PAYAAYTPHT ATTPATTTYG QRVPTAASPS 180
  181 NTNSSSSSNT GSQSGTLSTS LSNTTNTNTN MGPNGTVQNQ NQQGGEQLSK TNLYIRGLQQ 240
  241 GTTDKDLVNM CAQYGTIIST KAILDKTTNK CKGYGFVDFE QPAFAECAVK GLQGKGVQAQ 300
  301 MAKQQEQDPT NLYIANLPPH FKETDLEAML SKYGQVVSTR ILRDQQMNSK GVGFARMESR 360
  361 EKCEQIIQMF NGNTIPGAKD PLLVKFADGG PKKKNLFKTP DPNARAWRDV SAEGIPVAYD 420
  421 PTMQQNGVSV NVGTPIGVPY SRFSAPQVGG YPVAGSQWIP GYMMTQVDDQ TSYSPQYMQM 480
  481 AAAPPLGVTS YKPEAVNQVQ PRGISMMVSG DTGVPYGTMM PQLATLQIGN SYISPTYPYY 540
  541 APPPTIIPTM PMTDSEQAST AASPDEAYTQ YPHQAAPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle