YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: U3-55K-PA

General Information:
Name(s) found: U3-55K-PA / FBpp0090943 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|62471723|ref|NP_001014529.1| CG33505 [Drosophila melanogaster] [NCBI NR]
  • gi|61678367|gb|AAX52704.1| CG33505 [Drosophila melanogaster] [NCBI NR]
  • gi|21428458|gb|AAM49889.1| LD17611p [Drosophila melanogaster] [NCBI NR]
  • The gene U3 small nuclear riboprotein factor 55K is referred to in FlyBase by the symbol Dmel\U3-55K (CG33505, FBgn0053505). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10746350..10748250. It has the cytological map location 51C5. There is experimental evidence that it has the molecular function</span>: U3 snoRNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: rRNA processing. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • LD17611p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(10746466..10746704,10746761..10746897,10746955..10747152,10747214..10748040,10748091..10748144); ID=FBpp0090943; name=CG33505-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA, [fly-100309-contam.fasta]
  • CG33505-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(10746466..10746704,10746761..10746897,10746955..10747152,10747214..10748040,10748091..10748144); ID=FBpp0090943; name=CG33505-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(10746466..10746704,10746761..10746897,10746955..10747152,10747214..10748040,10748091..10748144); ID=FBpp0090943; name=CG33505-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG33505 OS=Drosophila melanogaster GN=U3-55K PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(10746466..10746704,10746761..10746897,10746955..10747152,10747214..10748040,10748091..10748144); ID=FBpp0090943; name=U3-55K-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704,FlyMine:FBpp0090943,modMine:FBpp0090943; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(14860586..14860639,14859709..14860535,14859450..14859647,14859256..14859392,14858961..14859199)); ID=FBpp0090943; name=U3-55K-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704,FlyMine:FBpp0090943,modMine:FBpp0090943; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(14860586..14860639,14859709..14860535,14859450..14859647,14859256..14859392,14858961..14859199)); ID=FBpp0090943; name=U3-55K-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704,FlyMine:FBpp0090943,modMine:FBpp0090943; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • LD17611p OS=Drosophila melanogaster GN=U3-55K PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0090943 type=protein; loc=2R:complement(join(14860586..14860639,14859709..14860535,14859450..14859647,14859256..14859392,14858961..14859199)); ID=FBpp0090943; name=U3-55K-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704,FlyMine:FBpp0090943,modMine:FBpp0090943; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(14860586..14860639,14859709..14860535,14859450..14859647,14859256..14859392,14858961..14859199)); ID=FBpp0090943; name=U3-55K-PA; parent=FBgn0053505,FBtr0091445; dbxref=FlyBase:FBpp0090943,FlyBase_Annotation_IDs:CG33505-PA,GB_protein:AAX52704.1,REFSEQ:NP_001014529,GB_protein:AAX52704,UniProt/TrEMBL:Q8MSW9,FlyMine:FBpp0090943,modMine:FBpp0090943; MD5=2400e44f63b78bcf0191f6ccbf25d8ae; length=484; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 484 amino acids

    Gene Ontology:
    Cellular Component: small nuclear ribonucleoprotein complex [ISS]
    Biological Process: rRNA processing [ISS]
    Molecular Function: mRNA binding [ISS]
    U3 snoRNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSFFLKPG AKGTKKRKNP AATTKGKPLK KGGKPGKSTP AAGGPVPKKQ RRPKEEDEEI  60
   61 ASDDEEYNSD LGGDDNTLAF SSDEGEEETP QDKRLRLAKQ YLSEIEKQEA ERAEDRELAQ 120
  121 SVEQRLQTEY LDSVGKLRRN IAGSLKACES SRILKHKLHH TPICALALSP DGKFLYTGAK 180
  181 SQFLLKWCTE TGKVLEKSDV LSHREEPETG KKRRSHVISI CLSSDMKYLA LAEGGPHIQI 240
  241 WCPQTMKHIK TLKGHRDSVA GLVFRKGTHD LYSAAKDRSV KIWSLDEMAY VESLFGHQTA 300
  301 VTSIDALSRE RAITAGGSDC SLRIWKITEE SQLIYNGHKD SIECVKYIND EHFVSGGMDG 360
  361 AIGLWSALKK KPICTTQLAH GVGENGVANW ITAIAVVVNT DLVATGSCDG CVRLWQTNPN 420
  421 ARKMNLIQSI SIAGFINGLA FNADGSKLFV ATGQEHRLGR WWRLKEAKNQ VVVLDVKLQS 480
  481 AASS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..418] PSI-BLAST 53.30103 Cdc4 F-box and linker domains; Cdc4 propeller domain
    2 View Details [419..484] FFAS03 0.975 No description for 2i3sA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle