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Protein Overview: APK4_ARATH

General Information:
Name(s) found: APK4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|28827764|gb|AAO50726.1| putative adenylylsulfate kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|28393175|gb|AAO42019.1| putative adenylylsulfate kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|18425199|ref|NP_569050.1| adenylylsulfate kinase, putative [Arabidopsis thaliana] [NCBI NR]
  • Adenylyl-sulfate kinase 4, chloroplastic OS=Arabidopsis thaliana GN=APK4 PE=1 SV=1 [Swiss-Prot]
  • putative adenylylsulfate kinase [Arabidopsis thaliana]gi|28393175|gb|AAO42019.1| putative adenylylsulfate kinase [Arabidopsis thaliana]gi|18425199|ref|NP_569050.1| adenylylsulfate kinase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Adenylylsulfate kinase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | adenylylsulfate kinase, putative | chr5:26956568-26958068 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative adenylylsulfate kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / kinase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: APK4 | adenosine-5'-phosphosulfate (APS) kinase 4 | chr5:26939342-26940842 FORWARD LENGTH=310 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Adenylyl-sulfate kinase OS=Arabidopsis thaliana GN=APK4 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    plastid [TAS]
    Biological Process: male gamete generation [IGI]
    sulfate assimilation [ISS]
    Molecular Function: ATP binding [IEA][ISS]
    transferase activity, transferring phosphorus-containing groups [IEA][ISS]
    kinase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVAAMARCV GRCYVSPAFG ESESHRLSER RFLKLSSSTN SDPAGSKSLK LRGKIHRRMS  60
   61 YFRPIMAKDE SISSRSGETK QINGKQKNIV WHDCPVTKSD RQELIKQKGC VIWITGLSGS 120
  121 GKSSLACALS RALHNRGKLS YILDGDNVRH GLNSDLSFEA DDRAENIRRV GEVAKLFADS 180
  181 GIICIASLIS PYRIERAACR ALLPQGDFIE VFMDVPLHVC EARDPKGLYK RARAGKIKGF 240
  241 TGVDDPYEAP LDCEIVIQNS RDKGLSSSSS SSSSPSSSSS SLCEMADIVV SYLDQNGYLK 300
  301 KHSTKSRNCM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] PSI-BLAST 15.69897 Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
    2 View Details [90..310] PSI-BLAST 47.09691 The crystal structure of human 3'-phosphoadenosine-5'-phosphosulfate synthetase 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.70949154761417 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.2254998559935 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.0914769303586 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.727912309521959 bayes_pls_golite062009
  • DNA binding
    		•  0.263924823205515 bayes_pls_golite062009
  • nucleotide binding
    		•  0.0593371872166591 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.0285347443435678 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle