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Protein Overview: PPOCM_ARATH

General Information:
Name(s) found: PPOCM_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PPOX2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 508 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    chloroplast envelope [IDA]
    plastid [IDA]
    Biological Process: porphyrin biosynthetic process [TAS]
    embryonic development ending in seed dormancy [IMP]
    Molecular Function: oxidoreductase activity [IEA]
    electron carrier activity [IEA]
    oxygen-dependent protoporphyrinogen oxidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGAVADHQ IEAVSGKRVA VVGAGVSGLA AAYKLKSRGL NVTVFEADGR VGGKLRSVMQ  60
   61 NGLIWDEGAN TMTEAEPEVG SLLDDLGLRE KQQFPISQKK RYIVRNGVPV MLPTNPIELV 120
  121 TSSVLSTQSK FQILLEPFLW KKKSSKVSDA SAEESVSEFF QRHFGQEVVD YLIDPFVGGT 180
  181 SAADPDSLSM KHSFPDLWNV EKSFGSIIVG AIRTKFAAKG GKSRDTKSSP GTKKGSRGSF 240
  241 SFKGGMQILP DTLCKSLSHD EINLDSKVLS LSYNSGSRQE NWSLSCVSHN ETQRQNPHYD 300
  301 AVIMTAPLCN VKEMKVMKGG QPFQLNFLPE INYMPLSVLI TTFTKEKVKR PLEGFGVLIP 360
  361 SKEQKHGFKT LGTLFSSMMF PDRSPSDVHL YTTFIGGSRN QELAKASTDE LKQVVTSDLQ 420
  421 RLLGVEGEPV SVNHYYWRKA FPLYDSSYDS VMEAIDKMEN DLPGFFYAGN HRGGLSVGKS 480
  481 IASGCKAADL VISYLESCSN DKKPNDSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..508] PSI-BLAST 63.045757 Crystal Structure of Protoporphyrinogen IX Oxidase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on NADH or NADPH
    		•  1.94752631746117 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.52511707514198 bayes_pls_golite062009
  • oxygen-dependent protoporphyrinogen oxidase activity
    		•  1.3578742399915 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.20561532241252 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  1.07656675953489 bayes_pls_golite062009
  • catalytic activity
    		•  1.03127962968326 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH group of donors
    		•  0.945028138297487 bayes_pls_golite062009
  • ferrous iron binding
    		•  0.166200528859874 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle