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Protein Overview: gi|30693405, gi|...

General Information:
Name(s) found: gi|30693405 [NCBI NR]
gi|19698375 [NCBI NR]
Description(s) found:
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  • gi|30693405|ref|NP_850956.1| HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic [Arabidopsis thaliana] [NCBI NR]
  • gi|19698375|gb|AAL93113.1|AF414942_1 holocarboxylase synthetase hcs2.e [Arabidopsis thaliana] [NCBI NR]
  • holocarboxylase synthetase hcs2.e [Arabidopsis thaliana]gi|30693405|ref|NP_850956.1| holocarboxylase synthetase 2 (HCS2.d) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: HCS2 | HCS2 (HOLOCARBOXYLASE SYNTHETASE 2); catalytic | chr1:14177639-14179280 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • biotin-[acetyl-CoA-carboxylase] ligase/ catalytic [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • holocarboxylase synthetase hcs2.e [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HCS2 | holocarboxylase synthetase 2 | chr1:14175198-14176839 REVERSE LENGTH=214 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Holocarboxylase synthetase 2 OS=Arabidopsis thaliana GN=HCS2 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4I4W2, Holocarboxylase synthetase 2 OS=Arabidopsis thaliana GN=HCS2 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEA]
    Molecular Function: catalytic activity [IEA]
    biotin-[acetyl-CoA-carboxylase] ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLISFSNF SEIPVGSVCV SDIQLKGRGR TKNVWESPKG CLMYSFTLEM EDGRVVPLIQ  60
   61 YVVSLAVTEA VKDVCDKKGL SYNDVKIKWP NDLYLNGLKI GGILCTSTYR SRKFLVSVGV 120
  121 GLNVDNEQPT TCLNAVLKDV CPPSNLLKRE EILGAFFKKF ENFFDLFMEQ GFKSLEELYY 180
  181 RTWLHSGQRV IAEEKNEDQV VQNVVTIQLL EMTM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 50.0 THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.46366406733797 bayes_pls_golite062009
  • ligase activity
    		•  1.22215897446525 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.92307591122679 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.92307591122679 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.92307153294189 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle