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Protein Overview: gi|14030645, gi|...

General Information:
Name(s) found: gi|18417067 [NCBI NR]
gi|17978905 [NCBI NR]
gi|14030645 [NCBI NR]
Description(s) found:
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  • gi|18417067|ref|NP_568288.1| ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|17978905|gb|AAL47422.1| AT5g13430/T22N19_80 [Arabidopsis thaliana] [NCBI NR]
  • gi|14030645|gb|AAK52997.1|AF375413_1 AT5g13430/T22N19_80 [Arabidopsis thaliana] [NCBI NR]
  • AT5g13430/T22N19_80 [Arabidopsis thaliana]gi|17978905|gb|AAL47422.1| AT5g13430/T22N19_80 [Arabidopsis thaliana]gi|18417067|ref|NP_568288.1| ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putat [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquinol-cytochrome C reductase iron-sulfur subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative | chr5:4305417-4307402 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g13430/T22N19_80 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • oxidoreductase/ ubiquinol-cytochrome-c reductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur subunit | chr5:4305414-4307399 REVERSE LENGTH=272 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Arabidopsis thaliana GN=At5g13430 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    membrane [IDA]
    mitochondrial respiratory chain complex III [IDA]
    Biological Process: oxidation reduction [TAS]
    Molecular Function: metal ion binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF  60
   61 SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER YPPGDPSKRA FAYFVLSGGR 120
  121 FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED 180
  181 DIKLANSVDV GSLRDPQEDS VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH 240
  241 YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] PSI-BLAST 5.69897 CYTOCHROME BC1 COMPLEX FROM BOVINE
    2 View Details [98..272] PSI-BLAST 42.69897 ISP subunit of the mitochondrial cytochrome bc1-complex, watersoluble domain; Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ubiquinol-cytochrome-c reductase activity
    		•  12.5243667017255 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
    		•  12.5243667017255 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors
    		•  9.125468664417 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  6.56410033542443 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  6.40889163290296 bayes_pls_golite062009
  • oxidoreductase activity
    		•  6.05060612159037 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  5.79350583896014 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  5.52425708699797 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  5.31511996363681 bayes_pls_golite062009
  • electron carrier activity
    		•  5.20213585732279 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  4.88364619884033 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  4.66567624087954 bayes_pls_golite062009
  • binding
    		•  1.1265044642485 bayes_pls_golite062009
  • catalytic activity
    		•  0.746741393172769 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  0.71220774812099 bayes_pls_golite062009
  • metal cluster binding
    		•  0.71220774812099 bayes_pls_golite062009
  • protein binding
    		•  0.439276074643623 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.54

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle