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Protein Overview: XRN2_ARATH

General Information:
Name(s) found: XRN2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75262831|sp|Q9FQ02.1|XRN2_ARATH RecName: Full=5'-3' exoribonuclease 2; AltName: Full=Protein EXORIBONUCLEASE 2 [NCBI NR]
  • gi|62319144|dbj|BAD94308.1| 5'-3' exoribonuclease 2 [Arabidopsis thaliana] [NCBI NR]
  • gi|51970342|dbj|BAD43863.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15238990|ref|NP_199069.1| XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ 5'-3' exoribonuclease/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • gi|11875630|gb|AAG40733.1|AF286720_1 XRN2 [Arabidopsis thaliana] [NCBI NR]
  • 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1 [Swiss-Prot]
  • unnamed protein product [Arabidopsis thaliana]gi|11875630|gb|AAG40733.1| XRN2 [Arabidopsis thaliana]gi|15238990|ref|NP_199069.1| 5'-3' exoribonuclease (XRN2) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 5'-3' exoribonuclease (XRN2) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ nucleic acid binding | chr5:17024741-17031762 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 5'-3' exoribonuclease 2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • XRN2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ exonuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: XRN2, AtXRN2 | exoribonuclease 2 | chr5:17007513-17014534 FORWARD LENGTH=1012 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1012 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: miRNA catabolic process [IMP]
    Molecular Function: 5'-3' exonuclease activity [ISS]
    nucleic acid binding [ISS]
    5'-3' exoribonuclease activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPSFYRWL IQRYPLTIQE VIEEEPLEVN GGGVTIPIDS SKPNPNGYEY DNLYLDMNGI  60
   61 IHPCFHPEDK PSPTTFTEVF QCMFDYIDRL FVMVRPRKLL FMAIDGVAPR AKMNQQRARR 120
  121 FRAAKDAAEA AAEEEQLREE FEREGKKLPP KVDSQVFDSN VITPGTEFMA TLSFALRYYI 180
  181 HVRLNSDPGW KNIKVILSDA NVPGEGEHKI MSYIRCNKNH PGYNPNTHHC LYGLDADLIM 240
  241 LSLATHEIHF SILREVVFFP GEEGKCFLCG QEGHRAADCE GKIKRKTGEM LDNTEADVVV 300
  301 KKPYEFVNIW ILREYLEHDM QIPGAKKNLD RLIDDFIFIC FFVGNDFLPH MPTLEIREGA 360
  361 IELLMSVYKN KFRSAKKYLT DSSKLNLRNV ERFIKAVGMY ENQIFQKRAQ VQQRQSERFR 420
  421 RDKARDKARD NARDNAQASR QFSGKLVQLD SLDEVSDSLH SSPSRKYLRL SLDDNIGVAN 480
  481 VETENSLKAE ELDNEEDLKF KLKKLLRDKG DGFRSGNGEQ DKVKLNKVGW RERYYEEKFA 540
  541 AKSVEEMEQI RRDVVLKYTE GLCWIMHYYY HGVCSWNWFY PYHYAPFASD LKGLEKLDIK 600
  601 FELGSPFKPF NQLLAVLPSA SAHALPECYR SLMTNPDSPI ADFYPADFEI DMNGKRYSWQ 660
  661 GISKLPFVEE KRLLEAAAQV EKSLTNEEIR RNSALFDMLF VVASHPLGEL IRSLNSRTNN 720
  721 LSNEERATII EKIDPGLSDG MNGYIASCGG DSQPSCFCST VEGMEDVLTN QVICAIYKLP 780
  781 EDIRGSEITH QIPRLAIPKK TISLVDLKSG GLLWHEDGDK RRAPPKVIKI KRYNPEGSIS 840
  841 GGRLGKASHR LVLQTINAQP DYMNINSEPA LCPNTVFQNE RVPKKIPTFK DNGIQWISPP 900
  901 PSQITPKKMN SPQRQKAWKK DETPQSREKS KKLKSSLKVN PLKMKKTKSP QREFTREKKK 960
  961 ENITPQRKLT KAQRQVKHIR MMEEAKMIKQ RKKEKYLRKK AKYAQGAPPK TA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] MSA 2.119939 View MSA. No confident structure predictions are available.
    2 View Details [190..439] deduced N/A No confident structure predictions are available.
    3 View Details [440..518] deduced N/A No confident structure predictions are available.
    4 View Details [519..683] MSA 2.107963 View MSA. No confident structure predictions are available.
    5 View Details [684..1012] PSI-BLAST 7.39794 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle