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Protein Overview: gi|18086332, gi|...

General Information:
Name(s) found: gi|22326646 [NCBI NR]
gi|18086332 [NCBI NR]
Description(s) found:
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  • gi|22326646|ref|NP_196352.2| tudor domain-containing protein / nuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18086332|gb|AAL57629.1| AT5g07350/T2I1_60 [Arabidopsis thaliana] [NCBI NR]
  • AT5g07350/T2I1_60 [Arabidopsis thaliana]gi|22326646|ref|NP_196352.2| tudor domain-containing protein / nuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | tudor domain-containing protein / nuclease family protein | chr5:2320345-2324893 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g07350/T2I1_60 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: Tudor1, AtTudor1, TSN1 | TUDOR-SN protein 1 | chr5:2320344-2324892 REVERSE LENGTH=991 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g07350/T2I1_60 OS=Arabidopsis thaliana GN=Tudor1 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4K6N0, AT5g07350/T2I1_60 OS=Arabidopsis thaliana GN=Tudor1 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 991 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    cell wall [IDA]
    plasma membrane [IDA]
    Biological Process: response to cadmium ion [IEP]
    Molecular Function: nucleic acid binding [IEA][ISS]
    hydrolase activity, acting on ester bonds [IEA]
    protein binding [IEA]
    nuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGAENQWL KGRVKAVTSG DCLVITALSH NRAGPPPEKT ITFSSLMAPK MARRGGIDEP  60
   61 FAWESKEFLR KLCIGKEVAF KVDYKVEAIA GREFGSVFLG NENLAKLVVK TGWAKVREPG 120
  121 QQNQDKVSPY IKELLQLEEL AKQEGYGRWS KVPGAAEASI RNLPPSAIGD SAGFDAMGLL 180
  181 AANKGKPMEG IVEQVRDGST IRVYLLPEFQ FVQVFVAGVQ APSMGRRTTN GSVVETVPDE 240
  241 PNGDVSAESR GPLTTAQRLA ASAASSVEVS SDPFATEAKY FTEHRVLSRD VRIVLEGVDK 300
  301 FNNLIGSVHY SDGETVKDLG LELVENGLAK FVEWSANMME EEAKKKLKAA ELQCKKDKVK 360
  361 MWANYVPPAT NSKAIHDQNF TGKVVEVVSG DCLIVADDAV PFGSPAAERR VCLSSIRSPK 420
  421 MGNPRREEKP APYAREAREF LRQRLIGKQV IVQMEYSRKV TQGDGPTTSG AADRFMDFGS 480
  481 VFLPSAAKAD SDEVTAPPAA AIAGSQPVGV NIAELVLVRG FGNVVRHRDF EERSNHYDAL 540
  541 LAAEARALAG KKGIHSAKES PAMHITDLTV SAAKKAKDFL PSLQRIRRIP AVVEYVLSGH 600
  601 RFKLYIPKIT CSIAFSFSGV RCPGRGEPYS EEAISVMRRR IMQRDVEIEV ETVDRTGTFL 660
  661 GSMWESRTNV ATVLLEAGLA KMQTSFGADR IAEAHLLEQA ERSAKNQKLK IWENYVEGEE 720
  721 VSNGNTNTVE TRQKETLKVV VTEVLGGGRF YVQSAGDQKI ASIQNQLASL SIKDAPIIGS 780
  781 FNPKRGDIVL AQFSLDNSWN RAMIVTAPRA AVQSPDEKFE VFYIDYGNQE TVPYSAIRPI 840
  841 DPSVSAAPGL AQLCRLAYIK VPSLEDDFGP EAGEYLHTVT LGSGKEFKAV IEERDTSGGK 900
  901 VKGQGTGTEF VVTLIAVDDE ISVNAAMLQE GIARMEKRQK WGHKGKQAAL DALEKFQEEA 960
  961 RKSRIGIWQY GDIESDDEDT GPARKPAGGR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 26.30103 No description for 2f0uA was found.
    2 View Details [165..375] Pfam 6.79588 No description for PF00565.9 was found. No confident structure predictions are available.
    3 View Details [376..991] PSI-BLAST 95.522879 No description for 3bdlA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle