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Protein Overview: SPS1_ARATH

General Information:
Name(s) found: SPS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|98960969|gb|ABF58968.1| At1g78510 [Arabidopsis thaliana] [NCBI NR]
  • gi|57999783|dbj|BAD88533.1| solanesyl diphosphate synthase 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|30699332|ref|NP_177972.2| SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase [Arabidopsis thaliana] [NCBI NR]
  • gi|19911233|dbj|BAB86941.1| solanesyl diphosphate synthase [Arabidopsis thaliana] [NCBI NR]
  • Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1 PE=1 SV=1 [Swiss-Prot]
  • solanesyl diphosphate synthase [Arabidopsis thaliana]gi|30699332|ref|NP_177972.2| solanesyl diphosphate synthase (SPS) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Solanesyl diphosphate synthase (SPS) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SPS1 | SPS1 (SOLANESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ trans-octaprenyltranstransferase | chr1:29540303-29542056 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • dimethylallyltranstransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • solanesyl diphosphate synthase 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g78510 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • solanesyl diphosphate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SPS1 | solanesyl diphosphate synthase 1 | chr1:29535410-29537163 REVERSE LENGTH=406 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IDA]
    Biological Process: ubiquinone biosynthetic process [IGI]
    Molecular Function: trans-octaprenyltranstransferase activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTSCRNIDL GTMMMACGCG RRQFPSLAKT VCKFTSSNRS YGGLVGSCKA VPTKSKEISL  60
   61 LNGIGQSQTV SFDLKQESKQ PISLVTLFEL VAVDLQTLND NLLSIVGAEN PVLISAAEQI 120
  121 FGAGGKRMRP GLVFLVSHAT AELAGLKELT TEHRRLAEII EMIHTASLIH DDVLDESDMR 180
  181 RGKETVHELF GTRVAVLAGD FMFAQASWYL ANLENLEVIK LISQVIKDFA SGEIKQASSL 240
  241 FDCDTKLDEY LLKSFYKTAS LVAASTKGAA IFSRVEPDVT EQMYEFGKNL GLSFQIVDDI 300
  301 LDFTQSTEQL GKPAGSDLAK GNLTAPVIFA LEREPRLREI IESEFCEAGS LEEAIEAVTK 360
  361 GGGIKRAQEL AREKADDAIK NLQCLPRSGF RSALEDMVLY NLERID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [82..406] PSI-BLAST 81.69897 Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle